HMMER2.0  [2.2g]
NAME  align1_stockholm
LENG  17
ALPH  Nucleic
RF    no
CS    no
MAP   yes
COM   hmmbuild --null ../per/eb.null --prior ../per/eb.pri -F align_ex1.hmm align1_stockholm
NSEQ  19
DATE  Thu Oct 30 20:32:29 2003
CKSUM 4418
XT      -9967     -1  -1000  -1000  -9967     -1  -9967     -1 
NULT      -1  -9967
NULE     396   -547   -547    396 
HMM        A      C      G      T    
         m->m   m->i   m->d   i->m   i->i   d->m   d->d   b->m   m->e
          -70      *  -4392
     1   -231   -514   1472  -1392     1
     -   -396    547    547   -396 
     -     -3  -9479 -10521   -894  -1115   -701  -1378    -70      * 
     2    568    158    834  -4321     2
     -   -396    547    547   -396 
     -     -3  -9479 -10521   -894  -1115   -701  -1378      *      * 
     3  -4321    273   2016  -1959     3
     -   -396    547    547   -396 
     -     -3  -9479 -10521   -894  -1115   -701  -1378      *      * 
     4  -1106   2016   -304  -4321     4
     -   -396    547    547   -396 
     -     -3  -9479 -10521   -894  -1115   -701  -1378      *      * 
     5   1357  -4323   -370  -4321     5
     -   -396    547    547   -396 
     -     -3  -9479 -10521   -894  -1115   -701  -1378      *      * 
     6    -93    560   1305  -4321     6
     -   -396    547    547   -396 
     -     -3  -9479 -10521   -894  -1115   -701  -1378      *      * 
     7  -4321   1915    690  -2407     7
     -   -573    519    685   -347 
     -  -4643    -60 -10521    -10  -7179   -701  -1378      *      * 
     8   -300   1801  -1414  -2189     9
     -   -396    547    547   -396 
     -     -3  -9479 -10521   -894  -1115   -701  -1378      *      * 
     9  -1229   2152  -1046  -4321    10
     -   -396    547    547   -396 
     -     -3  -9479 -10521   -894  -1115   -701  -1378      *      * 
    10  -4321   2486  -4323  -4321    11
     -   -396    547    547   -396 
     -     -3  -9479 -10521   -894  -1115   -701  -1378      *      * 
    11   1555  -4323  -4323  -4321    12
     -   -396    547    547   -396 
     -     -3  -9479 -10521   -894  -1115   -701  -1378      *      * 
    12   -126  -4323   -551    802    13
     -   -396    547    547   -396 
     -     -3  -9479 -10521   -894  -1115   -701  -1378      *      * 
    13  -1859  -4323   2181  -1399    14
     -   -396    547    547   -396 
     -     -3  -9479 -10521   -894  -1115   -701  -1378      *      * 
    14  -4321   2486  -4323  -4321    15
     -   -396    547    547   -396 
     -     -3  -9479 -10521   -894  -1115   -701  -1378      *      * 
    15   1555  -4323  -4323  -4321    16
     -   -482    643    -12     -6 
     -  -4643    -60 -10521    -10  -7179   -701  -1378      *      * 
    16  -1612   1168  -4323    602    18
     -   -396    547    547   -396 
     -     -3  -9479 -10521   -894  -1115   -701  -1378      *      * 
    17  -2636   1020     83    348    19
     -      *      *      *      * 
     -      *      *      *      *      *      *      *      *      0 
//