Species:	Caenorhabditis elegans
Sequence type:	predicted coding sequence
Corresponding gene:	T25B9.1 (WBGene00012007)
Corresponding protein:	WP:CE35627
Origin:	Wellcome Trust Sanger Institute, Cambridge UK
Sequence method:	curated
Source clone:	T25B9
Genomic Location:	IV:10,748,392..10,750,133
Interpolated Genetic Position:	IV:4.69472
Transcripts in this region:	T25B9.1
Microarray assays in this region:	191840_s_at
	A_12_P104071
	Aff_T25B9.1
	cea2.p.99285

GenPep:	CAA94376
Uniprot Accession number:	Q22768
Intronerator:	Intronerator: T25B9.1
Eugenes:	ACEPRED:T25B9.1
NextDB:	T25B9.1
WormPD (fee required):	T25B9.1

Remarks
960327: Weak splice 3 utilised for entry to final exon.
[021113 dl] Altered id based on communication from Richard Lambrecht
[030827 dl] Modified prediction based on OST data. Truncated intron 2
Contains similarity to Pfam domains PF00155 (Aminotransferase class I and II) , PF00266 (Aminotransferase class-V) contains similarity to Interpro domains IPR011282 (2-amino-3-ketobutyrate coenzyme A ligase), IPR015422 (Pyridoxal phosphate-dependent transferase, major region, subdomain 2), IPR004839 (Aminotransferase, class I/classII), IPR000192 (Aminotransferase, class V/Cysteine desulfurase), IPR015421 (Pyridoxal phosphate-dependent transferase, major region, subdomain 1)

Sequence

Genomic Position(s):

CHROMOSOME_IV: 10750133-10748392. [Browse map] [View EST alignments]

>T25B9.1 (1-1768) (unspliced + UTR - 1768 bp)
ATGTCTCTCA ACAGTATTCT CCAATTCATT CGTTCTATAC GACCTTCAAC AATGCGTCGG TGTTTCTCAA CTGCCACAAA 
TTACTTTGAA ATTCATTTGA AAAATGAATT AGCTGGAATT AAGAATGCTG GAACGTTCAA GACTGAAAGA GTCATTCAAG 
GAAGACAAGG TGTTTTGGTG AAAgtgagtg attttgaatt tttattcttc ttttgaatag gcaatgcaat cattatttgg 
aatctacaac tttatgaatt gttacttttt attaattaag GTAACCGGAT CTGACAAACC AGTCATCAAT TTTTGTGCCA 
ACAACTACCT CGGTTTGAGT AGTCATCCAG AAGTCATTGC TGCCGGCCAA AAGGCTTTGG AAACCCATGG AGCTGGACTC 
TCATCCGTTC GATTTATTTG TGGAACTCAA GATATTCATA AGGAATTGGA GCAAAAGATT GCACAGTTTC ACGGAACGGA 
AGATACCATT TTGTATGCAG CATGCTTTGA TGCAAATGGT GGGATTTTTG AAGTAATGAC TGGAGAGCAG GATTCAATAA 
TTTCTGATGA GCTCAATCAT GCTTCGATTA TTGATGGGAT CAGATTGAGT AAAGCAAAGA GGCTTCGATA TAAGCATTTG 
GATTTGGGAG ATTTGGAATC AAAATTAAAA GAAGCAGAAG gtacataaat gcattgatat ttattttcat tgagaaatta 
aaatttctaa tattgaacaa ataggttata tggtaggcag gcacgtttct gtgcttgcct acagttttat tgtctttggc 
taaaatattg tgtttgagaa tttaaaacgc caatggaaag ttgagaccat acttggatgc ggtctaatct aaatctttcc 
caagcattgt ccaacttttg cccaaggttt gccaagttct gaacctgacc aacaaaaaaa tttcaaattt ttcaaaaata 
tgtacaaaat ttcagATTCT CGATTCCGTC TAATTGTCAC TGATGGAGTC TTCTCAATGG ATGGGGATGT GGCACCACTT 
GGAGATATCA CTAGTCTCGC TGAAAAgtaa gacattaaaa ataattcttc tttgaacttt ttaaagATAT AATGCTCTCC 
TGTTTATTGA CGAGTGCCAT GCTACCGGGT TCTTTGGTAA AACTGGTCGA GGTACTGCTG AAGCTGTTGG AGGTCGTCCT 
GATGTTATCA ACTCTACCCT TGGAAAGGCT CTTGGTGGTT CAATGGGTGG ATATACAACC GGCCCAAAAC CCCTCATCGA 
TCTTTTGAGA CAACGCTCCC GTCCTTACTT GTTCTCCAAT TCACTTGCTC CAAGCATTGT GGGAAGTAGC ATCAAGgtat 
ctcatttccg tttagtgcaa acaaaactac gagaatttaa tagGTATTCG ATCTACTCAT GAACGATTCT TCATTCATTG 
GCTCGCTCCA AACAAATGTT TCTCACTTCC GTAAAAGTAT GGCTGCCAAT GGATTTACTA TTCTCGGAAA TGATCCAACT 
CATCCTATCT GTCCAGTTCT TCTTGGAGAT GCAAAGTTGG CCGCAACAAT GGCTGATGAA CTTTTGAAAA TGGGAATCTA 
TGTGATTGGT TTCTCTTTCC CAGTTGTTCC AAAAGGAAAA GCAAGAATTC GAGTTCAAAT TTCAGCTGCT CATTCGAAAC 
AACACATTGA TCAGTTAATC GAAGCATTTG CAACTGTAGG AAAGAAACTT AATGTTATCT GAaaacttaa taaaataaac 
gttttaat

>T25B9.1 (spliced + UTR - 1289)
ATGTCTCTCA ACAGTATTCT CCAATTCATT CGTTCTATAC GACCTTCAAC AATGCGTCGG TGTTTCTCAA CTGCCACAAA 
TTACTTTGAA ATTCATTTGA AAAATGAATT AGCTGGAATT AAGAATGCTG GAACGTTCAA GACTGAAAGA GTCATTCAAG 
GAAGACAAGG TGTTTTGGTG AAAGTAACCG GATCTGACAA ACCAGTCATC AATTTTTGTG CCAACAACTA CCTCGGTTTG 
AGTAGTCATC CAGAAGTCAT TGCTGCCGGC CAAAAGGCTT TGGAAACCCA TGGAGCTGGA CTCTCATCCG TTCGATTTAT 
TTGTGGAACT CAAGATATTC ATAAGGAATT GGAGCAAAAG ATTGCACAGT TTCACGGAAC GGAAGATACC ATTTTGTATG 
CAGCATGCTT TGATGCAAAT GGTGGGATTT TTGAAGTAAT GACTGGAGAG CAGGATTCAA TAATTTCTGA TGAGCTCAAT 
CATGCTTCGA TTATTGATGG GATCAGATTG AGTAAAGCAA AGAGGCTTCG ATATAAGCAT TTGGATTTGG GAGATTTGGA 
ATCAAAATTA AAAGAAGCAG AAGATTCTCG ATTCCGTCTA ATTGTCACTG ATGGAGTCTT CTCAATGGAT GGGGATGTGG 
CACCACTTGG AGATATCACT AGTCTCGCTG AAAAATATAA TGCTCTCCTG TTTATTGACG AGTGCCATGC TACCGGGTTC 
TTTGGTAAAA CTGGTCGAGG TACTGCTGAA GCTGTTGGAG GTCGTCCTGA TGTTATCAAC TCTACCCTTG GAAAGGCTCT 
TGGTGGTTCA ATGGGTGGAT ATACAACCGG CCCAAAACCC CTCATCGATC TTTTGAGACA ACGCTCCCGT CCTTACTTGT 
TCTCCAATTC ACTTGCTCCA AGCATTGTGG GAAGTAGCAT CAAGGTATTC GATCTACTCA TGAACGATTC TTCATTCATT 
GGCTCGCTCC AAACAAATGT TTCTCACTTC CGTAAAAGTA TGGCTGCCAA TGGATTTACT ATTCTCGGAA ATGATCCAAC 
TCATCCTATC TGTCCAGTTC TTCTTGGAGA TGCAAAGTTG GCCGCAACAA TGGCTGATGA ACTTTTGAAA ATGGGAATCT 
ATGTGATTGG TTTCTCTTTC CCAGTTGTTC CAAAAGGAAA AGCAAGAATT CGAGTTCAAA TTTCAGCTGC TCATTCGAAA 
CAACACATTG ATCAGTTAAT CGAAGCATTT GCAACTGTAG GAAAGAAACT TAATGTTATC TGAaaactta ataaaataaa 
cgttttaat

>T25B9.1 (conceptual translation - 420 aa)
MSLNSILQFI RSIRPSTMRR CFSTATNYFE IHLKNELAGI KNAGTFKTER VIQGRQGVLV KVTGSDKPVI NFCANNYLGL 
SSHPEVIAAG QKALETHGAG LSSVRFICGT QDIHKELEQK IAQFHGTEDT ILYAACFDAN GGIFEVMTGE QDSIISDELN 
HASIIDGIRL SKAKRLRYKH LDLGDLESKL KEAEDSRFRL IVTDGVFSMD GDVAPLGDIT SLAEKYNALL FIDECHATGF 
FGKTGRGTAE AVGGRPDVIN STLGKALGGS MGGYTTGPKP LIDLLRQRSR PYLFSNSLAP SIVGSSIKVF DLLMNDSSFI 
GSLQTNVSHF RKSMAANGFT ILGNDPTHPI CPVLLGDAKL AATMADELLK MGIYVIGFSF PVVPKGKARI RVQISAAHSK 
QHIDQLIEAF ATVGKKLNVI *

Predicted Exon Structure

NOTE: Transcript is on (-) strand.

	Relative to Itself		Relative to T25B9
Exon #	Start	End	Start	End
1	1	183	5151	4969
2	281	680	4871	4472
3	976	1066	4176	4086
4	1107	1356	4045	3796
5	1404	1742	3748	3410

Matching cDNAs

EC027893 OSTR137E8_1 yk436f11.3 MM454_contig12072 MM454_contig08980 yk704d1.3 EC032552 yk1361h07.5 yk704d1.5 yk1361h07.3 MM454_FPK17YK02KOPDF EC005192 EB997217 OSTF137E8_1 yk436f11.5