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Sequence Summary Gene Summary Protein Summary EST Alignments Nearby Genes Genome Browser Tree Display XML Schema Acedb Image

Sequence Summary for: Y87G2A.6

Specify a sequence using a clone ID (AC7) or a coding sequence (JC8.10a)

Identified as cyclophilin

[Identification] [DNA sequence] [Map position] [Similarities]

Description External Links
Species: Caenorhabditis elegans
Sequence type: predicted coding sequence
Corresponding gene: cyn-15 (WBGene00000891)
Corresponding protein: WP:CE24686
Origin: Wellcome Trust Sanger Institute, Cambridge UK
Sequence method: curated
Source clone: Y87G2A
Genomic Location: I:13,566,435..13,572,025
Interpolated Genetic Position: I:21.4887
Transcripts in this region: Y87G2A.6.2
Y87G2A.6.1
Microarray assays in this region: 190645_s_at
A_12_P104003
Aff_Y87G2A.J
Aff_Y87G2A.K
cea2.p.24266
GenPep: CAB60429
Uniprot Accession number: Q9U1Q3
Intronerator: Intronerator: Y87G2A.6
Eugenes: ACEPRED:Y87G2A.6
NextDB: Y87G2A.6
WormPD (fee required): Y87G2A.6


Remarks
C. elegans CYN-15 protein; contains similarity to Pfam domains PF00160 (Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD) , PF00400 (WD domain, G-beta repeat) (3)contains similarity to Interpro domains IPR002130 (Peptidyl-prolyl cis-trans isomerase, cyclophilin-type), IPR019781 (WD40 repeat, subgroup), IPR001680 (WD40 repeat), IPR020892 (Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site), IPR015943 (WD40/YVTN repeat-like-containing domain)



Sequence

>Y87G2A.6
atggagccagtcttcaaggaaccatcaccgaaaaaaaaacgagtcgaaaa
tccaccagaaaatgctccagatgccccaaaaaagccacaactcaagcatg
aatcagaatttttgcgttcaatcccgtcttcttcccaatacgagaaatca
tttatgcatcgggacacaatttctcacgttatcgcgacaaaaaccgattt
tataatcactgcaagcgtcgatggacacctgaaattctggaaaaagaagc
attccgaaggagtcgagtttgtcaagcatttccgttgtcatttgagtgaa
ttctcacatatttgtgcaaatatagacggtacactgctagcgaccgtctg
tgaagcggataaatccgtaaaagtgttcgatatcgagaatttcgacatga
ttaacatgataaagctggatttcccgccgaaaactgcgaattgggtacat
caaagcaacgatccgatcgcacatttggctattggagccgcggattctgg
aaaaatcattgttgtcgatggcaaagcaacggccgctccgatttgtatca
aggacaagcttcattcgacgccagtcaagataattgagtacagtcaaagt
ttggacataattgtgtcaatcgacgagtcgggaatgatcgaatgctggaa
cggggaacgtggagattttcagtttcccgagacgaaactcacctgggaat
acaagctagaaacggatctctacgattttgtaaaggcgaaaacgattcca
gtatgtgcgacttttgacccgtccggcttgaagctagccacgtttgccga
ggatcgaaaaattcgaattttcaatgtaaaaaccggaaaattggcgcaac
tgatcgatgaaacaacacagaaatatcattgcgaagcgaaagaaaataag
aattacggcctacaacatatggaatggagtcggcgtcttgcatcggaaaa
agaaatggataaagacaagaagaactcgttaaaatacacgaaaatctgtt
ttgatcaatctggaaatttccttctctacccgacaccaattggtgtgaaa
gtgttcaatttggtgacaaatgaggtttccagaaccattggaagggatga
agctattcgatttgtggctgtttcactctgtaatgcacttccagacattc
ggcagaagcttcagggtgctgcgatcacgctggaaacggcggccgctgat
aatccgacgcttaaccggaaaaccgatccggatccgttgatggtctgctg
tgctctgcgtaaaaatcgattctacctattcacgaacactgagccgtata
acgttgaagacgatgaaggaaatccgtcagtttccggaagagatgtgttt
aatgagaggccaaagaaggaggatctactgacagcgttggatacggaagg
aggtgagaaagtactgaataaagaagcaataatccatacatcattcggtg
atatcacaattcgtcttttcggtgatgaatgtccaaaaaccgttgaaaac
ttctgtacccactcacgtcgtggatattataatgggctaacattccatcg
agtcatcaaatcatttatgattcaaactggtgatccatctggaaaaggaa
ctggtggagaatcaatttggggtgaagattttgaagatgaatttcatccc
agacttcgacacgataaacctttcaaagtttcaatggcaaatgctggtgg
tggaaatacgaatggatcacagttttttattactgtatgcccggctgatt
ggttggatggaaagaatactctttttggagaggtaacagctggaatgagt
gttgttcaacggatcaatcaagtatcgacattcgaaagaagtggacgacc
aagagaatcaattcagatcatgtcaattagtttgaaataa


Predicted Exon Structure

NOTE: Transcript is on (-) strand.

Relative to Itself Relative to Y87G2A
Exon # Start End Start End
1 1 588 81253 80666
2 1342 1995 79912 79259
3 2971 3120 78283 78134
4 4195 4584 77059 76670
5 5484 5591 75770 75663

Matching cDNAs

yk623d10.5 EC000294 yk1613h03.3 yk1539e01.3 MM454_contig04391 EC001212 OSTF087H2_1 yk131d10.5 yk623d10.3 MM454_FPK17YK02KKT5N yk131d10.3 yk1405e03.3 yk1541c05.3 yk632g1.5 EB999264 EC021175 yk219h11.5 yk1490f10.3 yk538e7.3 OSTR087H2_1 yk1529e08.5 yk219h11.3 yk1529e08.3 yk850d12.5 yk1539e01.5 yk1541c05.5 yk1405e03.5 yk1490f10.5 yk1613h03.5