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    <title>WormBase</title>
    <link rel="alternate" type="text/html" href="http://www.wormbase.org/" />
    <link rel="self" type="application/atom+xml" href="http://www.wormbase.org/atom.xml" />
   <id>tag:www.wormbase.org,2008://2</id>
    <link rel="service.post" type="application/atom+xml" href="http://www.wormbase.org/movable/mt-atom.cgi/weblog/blog_id=2" title="WormBase" />
    <updated>2008-04-30T17:46:29Z</updated>
    
 
<entry>
    <title>New release of WormBase: WS189</title>
    <link rel="alternate" type="text/html" href="http://www.wormbase.org/mt/wormbase/archives/2008/04/22/12.44.17/" />
    <link rel="service.edit" type="application/atom+xml" href="http://www.wormbase.org/movable/mt-atom.cgi/weblog/blog_id=2/entry_id=361" title="New release of WormBase: WS189" />
    <id>tag:www.wormbase.org,2008://2.361</id>
    
    <published>2008-04-22T17:44:17Z</published>
    <updated>2008-04-30T17:46:29Z</updated>
    
    <summary>WormBase has been updated to the WS189 release of the database. This release includes a new Ontology Search and numerous enhancements to the Genome Browser....</summary>
    <author>
        <name>Todd Harris</name>
        <uri>http://toddot.net/</uri>
    </author>
            <category term="release notes" />
    
    <content type="html" xml:lang="en" xml:base="http://www.wormbase.org/">
        <![CDATA[<p>WormBase has been updated to the WS189 release of the database.  This release includes a new <a href="/db/ontology/search">Ontology Search</a> and <a href="http://www.wormbase.org/wiki/index.php/Genome_Browser_Help">numerous enhancements</a> to the Genome Browser.</p>]]>
        
    </content>
</entry>
<entry>
    <title>modENCODE position at OICR in Toronto</title>
    <link rel="alternate" type="text/html" href="http://www.wormbase.org/mt/wormbase/archives/2008/04/21/14.23.36/" />
    <link rel="service.edit" type="application/atom+xml" href="http://www.wormbase.org/movable/mt-atom.cgi/weblog/blog_id=2/entry_id=360" title="modENCODE position at OICR in Toronto" />
    <id>tag:www.wormbase.org,2008://2.360</id>
    
    <published>2008-04-21T19:23:36Z</published>
    <updated>2008-04-23T14:29:57Z</updated>
    
    <summary>The Stein Lab at the Ontario Institute for Cancer Research is recruiting a software engineer and a data curator in support of the modENCODE Data Coordinating Center. The ideal candidate for the developer position will be Bachelors or Masters-level biologist...</summary>
    <author>
        <name>Todd Harris</name>
        <uri>http://toddot.net/</uri>
    </author>
            <category term="positions available" />
    
    <content type="html" xml:lang="en" xml:base="http://www.wormbase.org/">
        <![CDATA[<p>The <a href="http://www.oicr.on.ca/research/stein.htm" target="_blank">Stein Lab</a> at the<br />
<a href="http://www.oicr.on.ca" target="_blank">Ontario Institute for Cancer Research</a> is recruiting a software engineer and a data curator in support of the <a href="http://www.modencode.org" target="_blank">modENCODE</a> Data Coordinating Center. The ideal candidate for the developer position will be Bachelors or Masters-level biologist<br />
or computer scientist with significant experience in biological databases and production-quality<br />
software development.&nbsp; The data curator should have a Masters degree or Ph.D. in a the<br />
life sciences, experience with high volume functional genomics data, common bioinformatics<br />
tools, and some programming. A background in <i>C. elegans</i> or <i>D. melanogaster</i> biology or genetics would be a plus.&nbsp; These positions are based in Toronto, Canada.&nbsp; Please contact <a href="mailto:lstein@cshl.edu?subject=re:%20DCC%20positions"><br />
Lincoln Stein &lt;lstein@cshl.edu&gt;</a> for more information.</p>]]>
        
    </content>
</entry>
<entry>
    <title>C. japonica assembly now available</title>
    <link rel="alternate" type="text/html" href="http://www.wormbase.org/mt/wormbase/archives/2008/03/25/14.58.15/" />
    <link rel="service.edit" type="application/atom+xml" href="http://www.wormbase.org/movable/mt-atom.cgi/weblog/blog_id=2/entry_id=359" title="C. japonica assembly now available" />
    <id>tag:www.wormbase.org,2008://2.359</id>
    
    <published>2008-03-25T19:58:15Z</published>
    <updated>2008-03-30T11:02:17Z</updated>
    
    <summary>The preliminary assembly of C. japonica is now available from the Genome Sequencing Center (WUSTL) website. BLAST searching of the assembly is also available....</summary>
    <author>
        <name>Todd Harris</name>
        <uri>http://toddot.net/</uri>
    </author>
            <category term="external announcements" />
    
    <content type="html" xml:lang="en" xml:base="http://www.wormbase.org/">
        <![CDATA[<p>The preliminary <a href="http://genome.wustl.edu/pub/organism/Invertebrates/Caenorhabditis_japonica/assembly/Caenorhabditis_japonica-3.0.2/">assembly of <i>C. japonica</i></a> is now available from the <a href="http://genome.wustl.edu/">Genome Sequencing Center (WUSTL)</a> website.  <a href="http://genome.wustl.edu/tools/blast/">BLAST searching</a> of the assembly is also available.</p>]]>
        
    </content>
</entry>
<entry>
    <title>Cold Spring Harbor positions with the iPlant Cyberinfrastructure project</title>
    <link rel="alternate" type="text/html" href="http://www.wormbase.org/mt/wormbase/archives/2008/03/24/15.46.46/" />
    <link rel="service.edit" type="application/atom+xml" href="http://www.wormbase.org/movable/mt-atom.cgi/weblog/blog_id=2/entry_id=358" title="Cold Spring Harbor positions with the iPlant Cyberinfrastructure project" />
    <id>tag:www.wormbase.org,2008://2.358</id>
    
    <published>2008-03-24T20:46:46Z</published>
    <updated>2008-03-24T20:52:54Z</updated>
    
    <summary>Cold Spring Harbor is seeking applicants for the positions of Scientific Informatics Analyst, Scientific Informatics Developer and Web Applications Developer to work on the iPlant cyberinfrastructure project....</summary>
    <author>
        <name>Todd Harris</name>
        <uri>http://toddot.net/</uri>
    </author>
            <category term="positions available" />
    
    <content type="html" xml:lang="en" xml:base="http://www.wormbase.org/">
        <![CDATA[<p>Cold Spring Harbor is seeking applicants for the positions of <a href="http://www.iplantcollaborative.org/resources/job-postings/45-professional/108-scientific-informatics-analyst-i">Scientific Informatics Analyst</a>, <a href="http://www.iplantcollaborative.org/resources/job-postings/45-professional/107-scientific-informatics-analyst-iii">Scientific Informatics Developer</a> and <a href="http://www.iplantcollaborative.org/resources/job-postings/45-professional/109-web-application-developer">Web Applications Developer</a> to work on the iPlant cyberinfrastructure project.</p>]]>
        
    </content>
</entry>
<entry>
    <title>New release of WormBase: WS188</title>
    <link rel="alternate" type="text/html" href="http://www.wormbase.org/mt/wormbase/archives/2008/03/22/14.36.41/" />
    <link rel="service.edit" type="application/atom+xml" href="http://www.wormbase.org/movable/mt-atom.cgi/weblog/blog_id=2/entry_id=357" title="New release of WormBase: WS188" />
    <id>tag:www.wormbase.org,2008://2.357</id>
    
    <published>2008-03-22T19:36:41Z</published>
    <updated>2008-03-22T19:37:06Z</updated>
    
    <summary>WormBase has been updated to the WS188 release of the database....</summary>
    <author>
        <name>Todd Harris</name>
        <uri>http://toddot.net/</uri>
    </author>
            <category term="release notes" />
    
    <content type="html" xml:lang="en" xml:base="http://www.wormbase.org/">
        <![CDATA[<p>WormBase has been updated to the WS188 release of the database.</p>]]>
        
    </content>
</entry>
<entry>
    <title>2008 Topics Meeting: Aging, Stress, Pathogenesis, and Heterochrony</title>
    <link rel="alternate" type="text/html" href="http://www.wormbase.org/mt/wormbase/archives/2008/03/19/13.44.27/" />
    <link rel="service.edit" type="application/atom+xml" href="http://www.wormbase.org/movable/mt-atom.cgi/weblog/blog_id=2/entry_id=356" title="2008 Topics Meeting: Aging, Stress, Pathogenesis, and Heterochrony" />
    <id>tag:www.wormbase.org,2008://2.356</id>
    
    <published>2008-03-19T18:44:27Z</published>
    <updated>2008-03-19T18:45:52Z</updated>
    
    <summary>The website for the 2008 Topics Meeting in Aging, Stress, Pathogenesis, and Heterochrony is now available. The meeting will be held August 3-6 at the University of Wisconsin, Madison. The deadline to receive abstracts is Monday June 2, and the...</summary>
    <author>
        <name>Todd Harris</name>
        <uri>http://toddot.net/</uri>
    </author>
            <category term="meetings" />
    
    <content type="html" xml:lang="en" xml:base="http://www.wormbase.org/">
        <![CDATA[<p>The <a href="http://www.union.wisc.edu/ceaging/">website</a> for the 2008 Topics Meeting in Aging, Stress, Pathogenesis, and Heterochrony is now available. The meeting will be held August 3-6 at the University of Wisconsin, Madison. The deadline to receive abstracts is Monday June 2, and the registration deadline is  June 23rd.</p>]]>
        
    </content>
</entry>
<entry>
    <title>2008 Topics Meeting: Neuroscience</title>
    <link rel="alternate" type="text/html" href="http://www.wormbase.org/mt/wormbase/archives/2008/03/12/15.23.47/" />
    <link rel="service.edit" type="application/atom+xml" href="http://www.wormbase.org/movable/mt-atom.cgi/weblog/blog_id=2/entry_id=355" title="2008 Topics Meeting: Neuroscience" />
    <id>tag:www.wormbase.org,2008://2.355</id>
    
    <published>2008-03-12T20:23:47Z</published>
    <updated>2008-03-12T20:28:13Z</updated>
    
    <summary>The website for the 2008 Topics Meeting in Neuroscience is now available. The meeting will be held June 29th-July 2nd at the University of Wisconsin, Madison. Registration is now available and due April 28th, 2008....</summary>
    <author>
        <name>Todd Harris</name>
        <uri>http://toddot.net/</uri>
    </author>
            <category term="meetings" />
    
    <content type="html" xml:lang="en" xml:base="http://www.wormbase.org/">
        <![CDATA[<p>The <a href="http://www.union.wisc.edu/ceneuro/index.html">website</a> for the 2008 Topics Meeting in Neuroscience is now available.  The meeting will be held June 29th-July 2nd at the University of Wisconsin, Madison. Registration is now available and due April 28th, 2008.</p>]]>
        
    </content>
</entry>
<entry>
    <title>2008 Topics Meeting: Worm Genomics and Systems Biology</title>
    <link rel="alternate" type="text/html" href="http://www.wormbase.org/mt/wormbase/archives/2008/03/12/15.18.41/" />
    <link rel="service.edit" type="application/atom+xml" href="http://www.wormbase.org/movable/mt-atom.cgi/weblog/blog_id=2/entry_id=354" title="2008 Topics Meeting: Worm Genomics and Systems Biology" />
    <id>tag:www.wormbase.org,2008://2.354</id>
    
    <published>2008-03-12T20:18:41Z</published>
    <updated>2008-03-12T20:21:39Z</updated>
    
    <summary>The website for the 2008 Topics Meeting in Worm Genomics and Systems Biology is now available. The meeting will be held July 24-25, 2008 at the Broad Institute in Cambridge, MA. The abstract and registration deadlines are April 1st and...</summary>
    <author>
        <name>Todd Harris</name>
        <uri>http://toddot.net/</uri>
    </author>
            <category term="meetings" />
    
    <content type="html" xml:lang="en" xml:base="http://www.wormbase.org/">
        <![CDATA[<p>The <a href="http://bmpweb.umassmed.edu/wgm2008/">website</a> for the 2008 Topics Meeting in Worm Genomics and Systems Biology is now available.  The meeting will be held July 24-25, 2008 at the Broad Institute in Cambridge, MA.  The abstract and registration deadlines are April 1st and April 23rd, respectively.</p>]]>
        
    </content>
</entry>
<entry>
    <title>New release of WormBase: WS187</title>
    <link rel="alternate" type="text/html" href="http://www.wormbase.org/mt/wormbase/archives/2008/02/16/01.30.54/" />
    <link rel="service.edit" type="application/atom+xml" href="http://www.wormbase.org/movable/mt-atom.cgi/weblog/blog_id=2/entry_id=353" title="New release of WormBase: WS187" />
    <id>tag:www.wormbase.org,2008://2.353</id>
    
    <published>2008-02-16T06:30:54Z</published>
    <updated>2008-02-16T06:47:44Z</updated>
    
    <summary>WormBase has been updated to the WS187 release of the database [Release notes | raw files via FTP]....</summary>
    <author>
        <name>Todd Harris</name>
        <uri>http://toddot.net/</uri>
    </author>
            <category term="release notes" />
    
    <content type="html" xml:lang="en" xml:base="http://www.wormbase.org/">
        <![CDATA[<p>WormBase has been updated to the WS187 release of the database [<a href="/release_notes/letter.WS187">Release notes</a> | <a href="ftp://ftp.wormbase.org/pub/wormbase/acedb/WS187">raw files via FTP</a>].</p>]]>
        
    </content>
</entry>
<entry>
    <title>New release schedule</title>
    <link rel="alternate" type="text/html" href="http://www.wormbase.org/mt/wormbase/archives/2008/02/06/03.45.32/" />
    <link rel="service.edit" type="application/atom+xml" href="http://www.wormbase.org/movable/mt-atom.cgi/weblog/blog_id=2/entry_id=352" title="New release schedule" />
    <id>tag:www.wormbase.org,2008://2.352</id>
    
    <published>2008-02-06T08:45:32Z</published>
    <updated>2008-02-06T08:48:24Z</updated>
    
    <summary>Effective immediately, WormBase will be moving to a monthly release schedule. New releases of the database occur on the final Friday of the month, will be available on the development site a week later, and on www.wormbase.org two weeks thereafter....</summary>
    <author>
        <name>Todd Harris</name>
        <uri>http://toddot.net/</uri>
    </author>
            <category term="general news" />
    
    <content type="html" xml:lang="en" xml:base="http://www.wormbase.org/">
        <![CDATA[<p>Effective immediately, WormBase will be moving to a monthly release schedule.  New releases of the database occur on the final Friday of the month, will be available on the <a href="http://dev.wormbase.org/">development site</a> a week later, and on <a href="/">www.wormbase.org</a> two weeks thereafter.  A preliminary document showing dates of upcoming WormBase releases is available on the <a href="http://www.wormbase.org/wiki/index.php/Release_schedule">WormBase Wiki</a>.</p>]]>
        
    </content>
</entry>
<entry>
    <title>New release of WormBase: WS186</title>
    <link rel="alternate" type="text/html" href="http://www.wormbase.org/mt/wormbase/archives/2008/02/06/03.44.28/" />
    <link rel="service.edit" type="application/atom+xml" href="http://www.wormbase.org/movable/mt-atom.cgi/weblog/blog_id=2/entry_id=351" title="New release of WormBase: WS186" />
    <id>tag:www.wormbase.org,2008://2.351</id>
    
    <published>2008-02-06T08:44:28Z</published>
    <updated>2008-02-06T08:44:54Z</updated>
    
    <summary>WormBase has been updated to the WS186 release of the database....</summary>
    <author>
        <name>Todd Harris</name>
        <uri>http://toddot.net/</uri>
    </author>
            <category term="release notes" />
    
    <content type="html" xml:lang="en" xml:base="http://www.wormbase.org/">
        <![CDATA[<p>WormBase has been updated to the WS186 release of the database.</p>]]>
        
    </content>
</entry>
<entry>
    <title>WormBook chapters now indexed in PubMed</title>
    <link rel="alternate" type="text/html" href="http://www.wormbase.org/mt/wormbase/archives/2008/01/10/09.18.23/" />
    <link rel="service.edit" type="application/atom+xml" href="http://www.wormbase.org/movable/mt-atom.cgi/weblog/blog_id=2/entry_id=350" title="WormBook chapters now indexed in PubMed" />
    <id>tag:www.wormbase.org,2008://2.350</id>
    
    <published>2008-01-10T14:18:23Z</published>
    <updated>2008-01-10T14:23:57Z</updated>
    
    <summary>The WormBook team is pleased to announce that chapters are now indexed in PubMed. See, for example, the PubMed entry for &quot;The sensory cilia of Caenorhabditis elegans&quot;. Abstracts are linked directly to the full text at WormBook....</summary>
    <author>
        <name>Todd Harris</name>
        <uri>http://toddot.net/</uri>
    </author>
            <category term="wormbook" />
    
    <content type="html" xml:lang="en" xml:base="http://www.wormbase.org/">
        <![CDATA[<p>The WormBook team is pleased to announce that chapters are now indexed in PubMed.  See, for example, the PubMed entry for "<a href="http://www.ncbi.nlm.nih.gov/pubmed/18050505?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum">The sensory cilia of Caenorhabditis elegans</a>".  Abstracts are linked directly to the full text at WormBook.</p>]]>
        
    </content>
</entry>
<entry>
    <title>2008 Development Meeting website</title>
    <link rel="alternate" type="text/html" href="http://www.wormbase.org/mt/wormbase/archives/2008/01/08/08.43.30/" />
    <link rel="service.edit" type="application/atom+xml" href="http://www.wormbase.org/movable/mt-atom.cgi/weblog/blog_id=2/entry_id=348" title="2008 Development Meeting website" />
    <id>tag:www.wormbase.org,2008://2.348</id>
    
    <published>2008-01-08T13:43:30Z</published>
    <updated>2008-01-08T13:45:00Z</updated>
    
    <summary>The website for the 2008 Santa Cruz Developmental Biology Meeting is now available. The meeting will be held June 26-29, 2008....</summary>
    <author>
        <name>Todd Harris</name>
        <uri>http://toddot.net/</uri>
    </author>
            <category term="meetings" />
    
    <content type="html" xml:lang="en" xml:base="http://www.wormbase.org/">
        <![CDATA[<p>The website for the <a href="http://www.bio.unc.edu/SCDB/">2008 Santa Cruz Developmental Biology Meeting</a> is now available.  The meeting will be held June 26-29, 2008.</p>]]>
        
    </content>
</entry>
<entry>
    <title>New release of WormBase: WS185</title>
    <link rel="alternate" type="text/html" href="http://www.wormbase.org/mt/wormbase/archives/2007/12/23/22.47.58/" />
    <link rel="service.edit" type="application/atom+xml" href="http://www.wormbase.org/movable/mt-atom.cgi/weblog/blog_id=2/entry_id=347" title="New release of WormBase: WS185" />
    <id>tag:www.wormbase.org,2007://2.347</id>
    
    <published>2007-12-24T03:47:58Z</published>
    <updated>2008-01-02T15:50:10Z</updated>
    
    <summary>WormBase has been updated to the WS185 release of the database....</summary>
    <author>
        <name>Todd Harris</name>
        <uri>http://toddot.net/</uri>
    </author>
            <category term="release notes" />
    
    <content type="html" xml:lang="en" xml:base="http://www.wormbase.org/">
        <![CDATA[<p>WormBase has been updated to the WS185 release of the database.</p>]]>
        
    </content>
</entry>
<entry>
    <title>New interface for the Textpresso literature search</title>
    <link rel="alternate" type="text/html" href="http://www.wormbase.org/mt/wormbase/archives/2007/12/09/17.14.53/" />
    <link rel="service.edit" type="application/atom+xml" href="http://www.wormbase.org/movable/mt-atom.cgi/weblog/blog_id=2/entry_id=346" title="New interface for the Textpresso literature search" />
    <id>tag:www.wormbase.org,2007://2.346</id>
    
    <published>2007-12-09T22:14:53Z</published>
    <updated>2007-12-09T22:17:12Z</updated>
    
    <summary>Textpresso -- the software that powers the WormBase Literature Search -- has a new user interface. Available directly from the WormBase home page (select the &quot;Literature&quot; option), Textpresso searches individual sentences in the full text of 9461 papers and 24,526...</summary>
    <author>
        <name>Todd Harris</name>
        <uri>http://toddot.net/</uri>
    </author>
            <category term="general news" />
    
    <content type="html" xml:lang="en" xml:base="http://www.wormbase.org/">
        <![CDATA[<p><a href="http://www.textpresso.org/">Textpresso</a> -- the software that powers the WormBase Literature Search -- has a new user interface.  Available directly from the WormBase home page (select the "Literature" option), Textpresso searches individual sentences in the full text of 9461 papers and 24,526 abstracts.</p>]]>
        
    </content>
</entry>

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