- strain: QQ255
Caenorhabditis elegans - strain: QQ257
Caenorhabditis elegans - strain: QQ250
Caenorhabditis elegans - strain: QQ254
Caenorhabditis elegans - expression cluster: WBPaper00061422:let-607(RNAi)_regulated
Genes with a fold change of > 2 (either up or down) and FDR of < 0.1 were considered as differentially regulated genes.
Transcripts that showed significantly altered expression in animals fed with let-607 RNAi (HT115) bacteria comparing to animals fed with L4440 (control, HT115).
- expression cluster: WBPaper00045918:96h_infection_recovery_downregulated
Fold change > 2, p-value < 0.05.
Genes that showed decreased expression after recovering from 72 hours of S. enterica SL1344 infection by shifting animals to E. coli HT115 plus Tetracycline plates for 24 hours.
- expression cluster: WBPaper00045918:120h_infection_recovery_downregulated
Fold change > 2, p-value < 0.05.
Genes that showed decreased expression after recovering from 96 hours of S. enterica SL1344 infection by shifting animals to E. coli HT115 plus Tetracycline plates for 24 hours.
- expression cluster: WBPaper00045918:96h_infection_recovery_upregulated
Fold change > 2, p-value < 0.05.
Genes that showed increased expression after recovering from 72 hours of S. enterica SL1344 infection by shifting animals to E. coli HT115 plus Tetracycline plates for 24 hours.
- expression cluster: WBPaper00045918:120h_infection_recovery_upregulated
Fold change > 2, p-value < 0.05.
Genes that showed increased expression after recovering from 96 hours of S. enterica SL1344 infection by shifting animals to E. coli HT115 plus Tetracycline plates for 24 hours.
- expression cluster: WBPaper00056391:HT115_downregulated
Differentially regulated genes were determined on the basis of fold change (> 2) and the value of a modified Wilcoxon rank test (> 1.5). Th eWilcoxon coefficient was determined for each probe set as the smallest expression value in the condition with higher average divided by the highest expression value in the condition with lower average.
Transcripts with significantly decreased expression by feeding on E. coli HT115 vs. E. coli OP50. in young adult glp-4(bn2) worms, grown on E. coli HT115 since L1 stage. Fold changes shown are normalized to the genes expression levels in E. coliOP50.