- WBPaper00050094:mes-6(bn66)_upregulated
Fold change > 2.
Transcripts that showed significantly increased expression in the dissected gonads of mes-6(bn66) dpy-20(e1282)(IV), comparing to in the dissected gonads of dpy-20(e1282)(IV)
- WBPaper00050094:mes-6(bn66)_downregulated
Fold change > 2.
Transcripts that showed significantly decreased expression in the dissected gonads of mes-6(bn66) dpy-20(e1282)(IV), comparing to in the dissected gonads of dpy-20(e1282)(IV)
- WBPaper00055311:ppa-daf-19_upregulated
Differentially expressed genes were identified by the program cuffdiff (version 2.2.1) from the comparison of both Ppa-daf-19 alleles with two wildtype control samples. The sets of up- and down-regulated genes (FDR corrected p-value <0.05).
Transcripts that showed significantly increased expression in ppa-daf-19(tu1035) and ppa-daf-19(tu1124) comparing to RS2333 wild type control samples.
- WBPaper00055311:ppa-daf-19_downregulated
Differentially expressed genes were identified by the program cuffdiff (version 2.2.1) from the comparison of both Ppa-daf-19 alleles with two wildtype control samples. The sets of up- and down-regulated genes (FDR corrected p-value <0.05).
Transcripts that showed significantly decreased expression in ppa-daf-19(tu1035) and ppa-daf-19(tu1124) comparing to RS2333 wild type control samples.
- WBPaper00053771:down_by_skn-1(RNAi)_at_dpy-7(e88)
Authors considered genes differentially expressed if they had a q-value <= 0.05 and a b-value >= 1 or <= -1.
Transcripts that showed significantly decreased expression in skn-1(RNAi);dpy-7(e88) animals comparing to dpy-7(e88) vector controls.
- WBPaper00065623:19
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 19 expressed in: sh3_sh4 (gonadal sheath proximal).
- WBPaper00049635:dop-1(vs100)_upregulated
EdgeR with a Benjamini and Hochberg correction. Transcriptions that showed more than 1.5-fold of change in expression, as well as FDR-adjusted q-value < 0.01 were considered differentially expressed.
Transcripts that showed significantly increased expression in dop-1(vs100); [Pcol-19-UbG76V-GFP] comparing to in control animal odIs77[Pcol-19-UbG76V-GFP]
- WBPaper00049635:dop-1(vs100)_downregulated
EdgeR with a Benjamini and Hochberg correction. Transcriptions that showed more than 1.5-fold of change in expression, as well as FDR-adjusted q-value < 0.01 were considered differentially expressed.
Transcripts that showed significantly decreased expression in dop-1(vs100); [Pcol-19-UbG76V-GFP] comparing to in control animal odIs77[Pcol-19-UbG76V-GFP]