- WBPaper00060278:atp-2(RNAi)_upregulated
Cufflinks 2.2.1
Transcripts that showed significantly increased expression in glp-4(bn2);atp-2(RNAi), comparing to in glp-4(bn2) animals injected with empty vector.
- WBPaper00044128:daf-2(e1370)_upregulated
t-test
Proteins with increased expression in glp-4(bn2);daf-2(e1370) comparing to in glp-4(bn2) daf-16(mgDf50);daf-2(e1370) according to HPLC-MS proteomic analysis.
- WBPaper00044760:germline_specific
Authors extracted all genes with more than 25 mapped reads and computed fold changes for all gene loci between wild type and mutants. The group of genes with 4-fold up-regulation in wild type was considered to be specifically expressed in the germline, while genes with 4-fold down-regulation in wild type where assumed to be specific to somatic cell lineages.
Genes specifically expressed in germline when comparing RNAseq data of N2 to glp-4(bn2ts).
- WBPaper00044760:somatic_specific
Authors extracted all genes with more than 25 mapped reads and computed fold changes for all gene loci between wild type and mutants. The group of genes with 4-fold up-regulation in wild type was considered to be specifically expressed in the germline, while genes with 4-fold down-regulation in wild type where assumed to be specific to somatic cell lineages.
Genes specifically expressed in somatic tissue when comparing RNAseq data of N2 to glp-4(bn2ts).
- WBPaper00040412:germline-regulated_daf-12_target
All lists used an Fs:Ptab 0.01 cutoff.
Genes that were regulated by DAF-12 in response to germline loss, identified by comparing differentially expression genes between glp-1(e2141ts, 25C) vs. glp-1(e2141ts, 20C) and daf-12;glp-1(e2141ts, 25C) vs. daf-12;glp-1(e2141ts, 20C).