- WBPaper00048637:lin-35(n745)_starvation_upregulated
Statistical t-test: P < 0.015 for lin-35(n745) analysis with a threshold of 2-fold ratio of mis-regulation.
Genes with significantly increased expression in lin-35(n745) comparing to in N2 in starvation condition.
- WBPaper00048637:lin-35(n745)_starvation_downregulated
Statistical t-test: P < 0.015 for lin-35(n745) analysis with a threshold of 2-fold ratio of mis-regulation.
Genes with significantly decreased expression in lin-35(n745) comparing to in N2 in starvation condition.
- WBPaper00032425:down_in_lin-35
Sets of probesets with up- or down-regulated expression in the mutants relative to WT were determined via t test (two-tailed, homoscedastic) with a P value cutoff of 0.01, requiring in addition an average expression difference of 1.5 or greater on the natural scale.
Genes with expression level down in lin-35 mutant background.
- WBPaper00032425:up_in_lin-35
Sets of probesets with up- or down-regulated expression in the mutants relative to WT were determined via t test (two-tailed, homoscedastic) with a P value cutoff of 0.01, requiring in addition an average expression difference of 1.5 or greater on the natural scale.
Genes with expression level up in lin-35 mutant background.
- WBPaper00031832:slr-2_regulated
P-values were calculated using either t-tests or chi-square tests, where appropriate, using the statistic language R. Pearson correlation coefficients between lin-35 and slr-2 coregulated genes as well as standard errors of mean (or deviation) for all other experiments was calculated using Microsoft Excel.
A complete list of the genes that showed differential expression in a slr-2 mutant strain.
- WBPaper00038168:lin-35_upregulated
For each gene in each microarray hybridization experiment, the ratio of RNA levels from the two samples was transformed into a log2 value and the mean log2 ratio was calculated. The log2 ratios were normalized by print-tip Loess normalization (Dudoit and Yang, 2002). All genes with a false discovery rate of <= 5% (q <= 0.05) (Storey and Tibshirani, 2003) and a mean fold-change ratio of >= 1.5 were selected for further analysis.
Genes that were upregulated in lin-35.