- WBPaper00051245:pharyngeal-muscle_specific
Fold change > 2.
Proteins specifically expressed in pharyngeal muscle, according to tissue specific APX enzyme expression using myo-2 promoter, followed with mass spectrometry.
- WBPaper00051245:body-wall-muscle_specific
Fold change > 2.
Proteins specifically expressed in body wall muscle, according to tissue specific APX enzyme expression using myo-3 promoter, followed with mass spectrometry.
- WBPaper00065926:pgph-2(overepxreesion)_upregulated_glucose
Genes with anadjusted P-value <= 0.05 found by DESeq2 were assigned as differentially expressed.
Transcripts that showed significantly increased expression in animal with pgph-2 overepxreesion [pgph-2p-pgph-2; myo-2p-mcherry] in glucose excess condition.
- WBPaper00065926:pgph-2(overepxreesion)_upregulated
Genes with anadjusted P-value <= 0.05 found by DESeq2 were assigned as differentially expressed.
Transcripts that showed significantly increased expression in animal with pgph-2 overepxreesion [pgph-2p-pgph-2; myo-2p-mcherry] in normal growth condition.
- WBPaper00038060:SUMO-1_downregulated
The Linear Models for Microarray Data (Limma) package using linear model fitting for statistical testing with empirical Bayes variance smoothing procedure were applied to detection of differentially expressed genes in aex-3::His-SUMO-1 and myo-4::His-SUMO-1 nematodes when compared to N2. The obtained p values were corrected for multiple testing using Benjamini and Hochberg false discovery rate procedure. For downstream analysis, genes with FDR corrected p < 0.001 were used including 1,805 probe sets from aex-3::His-SUMO-1 versus N2 comparison (899 under- and 906 overexpressed) and 1,342 probe sets from myo-4::His-SUMO-1 versus N2 comparison (774 under and 568 overexpressed).
Genes showing < 0.5-fold down-regulated expression (p < 0.001) both in aex-3::His-SUMO-1 or myo-4::His-SUMO-1 C. elegans.
- WBPaper00038060:SUMO-1_upregulated
The Linear Models for Microarray Data (Limma) package using linear model fitting for statistical testing with empirical Bayes variance smoothing procedure were applied to detection of differentially expressed genes in aex-3::His-SUMO-1 and myo-4::His-SUMO-1 nematodes when compared to N2. The obtained p values were corrected for multiple testing using Benjamini and Hochberg false discovery rate procedure. For downstream analysis, genes with FDR corrected p < 0.001 were used including 1,805 probe sets from aex-3::His-SUMO-1 versus N2 comparison (899 under- and 906 overexpressed) and 1,342 probe sets from myo-4::His-SUMO-1 versus N2 comparison (774 under and 568 overexpressed).
Genes showing > 1.5-fold up-regulated expression (p<0.001) both in aex-3::His-SUMO-1 and myo-4::His-SUMO-1 C. elegans.