- WBPaper00028789:pmk-1_downregulated
At least 2 fold and P < 0.01, as determined by a t-test.
Genes downregulated by wild-type pmk-1 (upregulated in daf-2(e1368);pmk-1(km25) strain as compared to daf-2(e1368) strain) by at least 2 fold and P < 0.01, as determined by a t-test.
- WBPaper00028789:pmk-1_upregulated
At least 2 fold and P < 0.01, as determined by a t-test.
Genes upregulated by wild-type pmk-1 (downregulated in daf-2(e1368);pmk-1(km25) strain as compared to daf-2(e1368) strain) by at least 2 fold and P < 0.01, as determined by a t-test.
- WBPaper00065823:pmk-1(km25)_upregulated
fold change > 2, p-value < 0.05
Transcripts that showed significantly increased expression in pmk-1(km25) BPW156 animals comparing to in BPW158 wild type animals
- WBPaper00056275:P.aeruginosa_upregulated_pmk-1(km25)_dependent
DESeq2
Transcripts that showed significantly increased expression after N2 L4 animals were infected by P. aeruginosa (PA14) bacteria for 4 hours at 25C, but pmk-1(km25) animals showed reduced fold change after they went through the same infection.
- WBPaper00050515:pmk-1(km25)_downregulated
Differentially regulated transcripts were determined by edgeR. For the microarray and NanoString analyses, genes were considered differentially regulated at FDR < 0.05 and log2 (Fold Change) > 1 or < 1.
Transcripts that showed significantly decreased expression in pmk-1(km25) comparing to in N2.
- WBPaper00050515:pmk-1(km25)_upregulated
Differentially regulated transcripts were determined by edgeR. For the microarray and NanoString analyses, genes were considered differentially regulated at FDR < 0.05 and log2 (Fold Change) > 1 or < 1.
Transcripts that showed significantly increased expression in pmk-1(km25) comparing to in N2.
- WBPaper00046083:pmk-1(km25)_OP50_upregulated
The significantly expressed genes were selected based on ANOVA analysis by Partek Genomics Suite software. Genes with a p-value of <0.05 and a 2-fold or greater fold change were considered differentially expressed.
Genes that showed more than 2 fold increased expression in pmk-1(km25) comparing to in N2 when fed with OP50.
- WBPaper00046083:pmk-1(km25)_OP50_downregulated
The significantly expressed genes were selected based on ANOVA analysis by Partek Genomics Suite software. Genes with a p-value of <0.05 and a 2-fold or greater fold change were considered differentially expressed.
Genes that showed more than 2 fold increased expression in pmk-1(km25) comparing to in N2 when fed with OP50.