- WBPaper00060764:swsn-9(ok1354)_downregulated
DESeq2, FDR<0.05 and fold-change 2. (Threshold set by WormBase curator.)
Transcripts that showed significantly decreased expression in RA629 swsn-9(ok1354);rdIs49[Cb-unc-119] comparing to in RA577 swsn-9(ok1354); rdIs52 [Pric-19::swsn-9::gfp; Cb-unc-119] (swsn-9 neuronal rescue) animals at young adult worms.
- WBPaper00060764:swsn-9(ok1354)_upregulated
DESeq2, FDR<0.05 and fold-change 2. (Threshold set by WormBase curator.)
Transcripts that showed significantly increased expression in RA629 swsn-9(ok1354);rdIs49[Cb-unc-119] comparing to in RA577 swsn-9(ok1354); rdIs52 [Pric-19::swsn-9::gfp; Cb-unc-119] (swsn-9 neuronal rescue) animals at young adult worms.
- WBPaper00041072:UTX-1_interacting_protein
MS mass tolerance was set to 10 ppm, while MS-MS tolerance was set to 0.6 Da. Peptide validation was performed using Percolator and peptide false discovery rate (FDR) was set to 0.01. For additional filtering, maximum peptide rank was set to 1 and minimum number of peptides per protein was set to 2. Protein grouping was performed, in order to avoid presence of different proteins identified by non-unique peptides.
Proteins that physically interact with UTX-1, according to immunoprecipitation of UTX-1-GFP and mass spectrometry.