- WBPaper00053810:sod-2(ok1030)_downregulated
Differential gene expression analysis was performed using the quasi-likeli-hood framework in edgeR package v. 3.20.1 in R v. 3.4.1.
Transcripts that showed significantly decreased expression in sod-2(ok1030), comparing to in N2.
- WBPaper00053810:sod-2(ok1030)_upregulated
Differential gene expression analysis was performed using the quasi-likeli-hood framework in edgeR package v. 3.20.1 in R v. 3.4.1.
Transcripts that showed significantly increased expression in sod-2(ok1030), comparing to in N2.
- WBPaper00065945:global-rpoa-2(-)_upregulated_transcript
DESeq2, fold change >= 2, FDR < 0.05.
Transcripts that showed significantly increased expression in global RPOA-2-depleted L1 animals (degron-GFP-rpoa-2;eft-3p-TIR1, +IAA), compared to controls (degron-GFP-rpoa-2,+IAA).
- WBPaper00045217:prg-1_progressively_regulated
Genes with more than 2-fold change in expression level are considered differentially expressed.
Genes altered by more than 2-Fold in late versus early generation prg-1 mutants and prg-1; daf-2 mutants. Samples include prg-1(pk2290), prg-1(n4357), prg-1(tm872), prg-1(pk2290); daf-2(e1368), prg-1(pk2290); daf-2(e1370), prg-1(tm872); daf-2(e1370), prg-1(tm872); daf-2(m41).
- WBPaper00065945:epidermis-rpoa-2(-)_upregulated_protein
DEP, fold change >= 2, p-value < 0.05.
Proteins that showed significantly increased expression in epidermis RPOA-2-depleted L1 animals (degron-GFP-rpoa-2;col-10p-TIR1, +IAA), compared to controls (degron-GFP-rpoa-2,+IAA).