- WBPaper00040446:insoluble_protein
Only peptides of confidence >50% were used for protein quantification, and a 95% confidence (unused prot score > 1.3) threshold for protein identification as determined by Protein Pilot 3.0 was the criteria for inclusion into the final protein report.
Insoluable proteins isolated from day 1 to day 11 old adults of TJ1060 [spe-9(hc88)I; fer-15(b26)II] using liquid chromatography and mass spetrometry
- WBPaper00041071:spe-44_downregulated
Microarray data were analyzed by Microarray Suite 5.0 (Affymetrix) and Genomics Suite (Partek) software, using a p-value threshold of 0.05 for differential expression.
Genes with significantly decreased expression in spe-44(ok1400) comparing to N2.
- WBPaper00041071:spe-44_upregulated
Microarray data were analyzed by Microarray Suite 5.0 (Affymetrix) and Genomics Suite (Partek) software, using a p-value threshold of 0.05 for differential expression.
Genes with significantly increased expression in spe-44(ok1400) comparing to N2.
- WBPaper00064502:spe-44(fx110)_downregulated
DESeq2, fold change > 2 and a BenjaminiHochberg multiple hypothesis-corrected P-value cutoff of 0.05 was used as a cutoff for significant differen-tial expression.
Transcripts that showed significantly decreased expression in spe-44(fx110) comparing to in control male animals.
- WBPaper00064502:spe-44(fx110)_upregulated
DESeq2, fold change > 2 and a BenjaminiHochberg multiple hypothesis-corrected P-value cutoff of 0.05 was used as a cutoff for significant differen-tial expression.
Transcripts that showed significantly increased expression in spe-44(fx110) comparing to in control male animals.
- WBPaper00057143:ztf-11(RNAi)_downregulated
DESeq2, FDR < 0.01
Transcripts that showed significantly decreased expression in embryos with ztf-11(RNAi) performed on TV23837[ztf-11(wy1100); eri-1(mg366); oxIs322; ynIs49], comparing to animals injected with control vector.
- WBPaper00057143:ztf-11(RNAi)_upregulated
DESeq2, FDR < 0.01
Transcripts that showed significantly increased expression in embryos with ztf-11(RNAi) performed on TV23837[ztf-11(wy1100); eri-1(mg366); oxIs322; ynIs49], comparing to animals injected with control vector.
- WBPaper00038104:DATS_upregulated
2-sample t-test adjusted for multiple testing by the Benjamini-Hochberg correction and clustering analyses of significant genes (HOPACH)
Genes that showed increased expression after 24h of DATS(garlic constituent diallyl trisulfide) treatment in spe-9(hc88); fer-15(b26) worms.