- WBPaper00045842:elt-2_dependent_hypoxia_upregulated
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Genes with significant upregulation following hypoxia in an ELT-2-dependent manner. RNAseq were performed on normoxia N2, hypoxia N2, normoxia elt-2(RNAi) and hypoxia elt-2(RNAi) animals.
- WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15)\;elt-7(tm840)_doenregulated
RNA-seq count data were filtered for detected genes (> 10 counts across all samples) and analyzed using DESeq. 2 with Cook's cutoff filtering set to FALSE. Genes were counted as differentially expressed if they registered a Benjamini-Hochberg corrected p-value less than 0.05 and a log2-fold change greater than 1.2 between any pair-wise conditional comparison.
Genes that are down-regulated in elt-2(ca15) larvae compared to elt-2(ca15);elt-7(tm840) larvae.
- WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15)\;elt-7(tm840)_upregulated
RNA-seq count data were filtered for detected genes (> 10 counts across all samples) and analyzed using DESeq. 2 with Cook's cutoff filtering set to FALSE. Genes were counted as differentially expressed if they registered a Benjamini-Hochberg corrected p-value less than 0.05 and a log2-fold change greater than 1.2 between any pair-wise conditional comparison.
Genes that are up-regulated in elt-2(ca15) larvae compared to elt-2(ca15);elt-7(tm840) larvae.
- WBPaper00053606:N2_vs_elt-2(ca15)\;elt-7(tm840)_downregulated
RNA-seq count data were filtered for detected genes (> 10 counts across all samples) and analyzed using DESeq. 2 with Cook's cutoff filtering set to FALSE. Genes were counted as differentially expressed if they registered a Benjamini-Hochberg corrected p-value less than 0.05 and a log2-fold change greater than 1.2 between any pair-wise conditional comparison.
Genes that are down-regulated in wild-type N2 larvae compared to elt-2(ca15);elt-7(tm840) larvae.
- WBPaper00053606:N2_vs_elt-2(ca15)\;elt-7(tm840)_upregulated
RNA-seq count data were filtered for detected genes (> 10 counts across all samples) and analyzed using DESeq. 2 with Cook's cutoff filtering set to FALSE. Genes were counted as differentially expressed if they registered a Benjamini-Hochberg corrected p-value less than 0.05 and a log2-fold change greater than 1.2 between any pair-wise conditional comparison.
Genes that are up-regulated in wild-type N2 larvae compared to elt-2(ca15);elt-7(tm840) larvae.
- WBPaper00046858:elt-2(RNAi)_upregulated
Filtering for high-quality data resulted in 7,880 genes with expression values >2.5 fold over background in >70% of the microarrays. These gene expression profiles were analyzed with the SAM microarray analysis package; a two-class testing configuration was used to identify genes differentially-expressed during infection in untreated worms compared to elt-2(RNAi) worms, with a false discovery rate of 9%.
Genes that showed significantly increased expression in elt-2(RNAi) comparing to in control RNAi worms.
- WBPaper00046858:elt-2(RNAi)_downregulated
Filtering for high-quality data resulted in 7,880 genes with expression values >2.5 fold over background in >70% of the microarrays. These gene expression profiles were analyzed with the SAM microarray analysis package; a two-class testing configuration was used to identify genes differentially-expressed during infection in untreated worms compared to elt-2(RNAi) worms, with a false discovery rate of 9%.
Genes that showed significantly decreased expression in elt-2(RNAi) comparing to in control RNAi worms.