- WBPaper00061422:let-607(RNAi)_regulated
Genes with a fold change of > 2 (either up or down) and FDR of < 0.1 were considered as differentially regulated genes.
Transcripts that showed significantly altered expression in animals fed with let-607 RNAi (HT115) bacteria comparing to animals fed with L4440 (control, HT115).
- WBPaper00045918:96h_infection_recovery_downregulated
Fold change > 2, p-value < 0.05.
Genes that showed decreased expression after recovering from 72 hours of S. enterica SL1344 infection by shifting animals to E. coli HT115 plus Tetracycline plates for 24 hours.
- WBPaper00045918:96h_infection_recovery_upregulated
Fold change > 2, p-value < 0.05.
Genes that showed increased expression after recovering from 72 hours of S. enterica SL1344 infection by shifting animals to E. coli HT115 plus Tetracycline plates for 24 hours.
- WBPaper00045918:120h_infection_recovery_upregulated
Fold change > 2, p-value < 0.05.
Genes that showed increased expression after recovering from 96 hours of S. enterica SL1344 infection by shifting animals to E. coli HT115 plus Tetracycline plates for 24 hours.
- WBPaper00056391:HT115_downregulated
Differentially regulated genes were determined on the basis of fold change (> 2) and the value of a modified Wilcoxon rank test (> 1.5). Th eWilcoxon coefficient was determined for each probe set as the smallest expression value in the condition with higher average divided by the highest expression value in the condition with lower average.
Transcripts with significantly decreased expression by feeding on E. coli HT115 vs. E. coli OP50. in young adult glp-4(bn2) worms, grown on E. coli HT115 since L1 stage. Fold changes shown are normalized to the genes expression levels in E. coliOP50.
- WBPaper00056391:HT115_upregulated
Differentially regulated genes were determined on the basis of fold change (> 2) and the value of a modified Wilcoxon rank test (> 1.5). Th eWilcoxon coefficient was determined for each probe set as the smallest expression value in the condition with higher average divided by the highest expression value in the condition with lower average.
Transcripts with significantly increased expression by feeding on E. coli HT115 vs. E. coli OP50. in young adult glp-4(bn2) worms, grown on E. coli HT115 since L1 stage. Fold changes shown are normalized to the genes expression levels in E. coliOP50.
- WBPaper00042258:HT115_downregulated_YoungAdult
Moderated T statistics in Limma was used to calculate significance. Significance was determined using an adjusted p value. Changes in gene expression that were 2-fold (p < 0.001) or greater were considered significantly changed.
Genes downregulated on E. coli HT115 relative to E. coli OP50, Young adult
- WBPaper00042258:HT115_upregulated_YoungAdult
Moderated T statistics in Limma was used to calculate significance. Significance was determined using an adjusted p value. Changes in gene expression that were 2-fold (p < 0.001) or greater were considered significantly changed.
Genes upregulated on E. coli HT115 relative to E. coli OP50, Young adult