- WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
DESeq2. Differentially-expressed genes (DEG) were identified based on two criteria: FDR (False discovery rateusing Benjamini-Hochberg adjusted p-values) < 0.01 and absolute value of log2(Fold Change) > 1.
Transcripts that showed significantly decreased expression in animals with germline-specific inx-14(RNAi) comparing to in aniamls fed with control vector, both exposed to PA14 infection.
- WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
DESeq2. Differentially-expressed genes (DEG) were identified based on two criteria: FDR (False discovery rateusing Benjamini-Hochberg adjusted p-values) < 0.01 and absolute value of log2(Fold Change) > 1.
Transcripts that showed significantly increased expression in animals with germline-specific inx-14(RNAi) comparing to in aniamls fed with control vector, both exposed to PA14 infection.
- WBPaper00061527:T22D1.5-inx-14
All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform.
Coexpression clique No. 20, T22D1.5-inx-14, on the genome-wide coexpression clique map for the nematode GPL200 platform.
- WBPaper00065623:14
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 14 expressed in: Differentiated germ.
- WBPaper00034739:RIL17lessRIL14
The normalised data were analysed using a two-way ANOVA, testing for each gene the effects of LINE (N2, DR1350, RIL-14, RIL-17), TREATMENT (non-dauer vs dauer larva-inducing) and the LINE TREATMENT interaction, using a published PERL script.
Genes that showed lower expression in RIL-17 than in RIL-14.
- WBPaper00034739:RIL17moreRIL14
The normalised data were analysed using a two-way ANOVA, testing for each gene the effects of LINE (N2, DR1350, RIL-14, RIL-17), TREATMENT (non-dauer vs dauer larva-inducing) and the LINE TREATMENT interaction, using a published PERL script.
Genes that showed higher expression in RIL-17 than in RIL-14.
- WBPaper00066004:ceh-14(ch3)_upregulated
DESeq2(1.36.0), fold change > 2, FDR < 0.05.
Transcripts that showed significantly increased expression in ceh-14(ch3) comparing to in N2 at L4 larva stage.
- WBPaper00057347:nhr-14(tm1473)_upreglated
Useq 8.7.4, fold change > 2, adjusted p-value < 0.05.
Transcripts that showed significantly increased expression in nhr-14(tm1473) comparing to in N2 at L4 larva stage.