- WBPaper00064502:nhr-23(kry61)_downregulated
DESeq2, fold change > 2 and a BenjaminiHochberg multiple hypothesis-corrected P-value cutoff of 0.05 was used as a cutoff for significant differen-tial expression.
Transcripts that showed significantly decreased expression in nhr-23(kry61) comparing to in control male animals.
- WBPaper00064502:nhr-23(kry61)_upregulated
DESeq2, fold change > 2 and a BenjaminiHochberg multiple hypothesis-corrected P-value cutoff of 0.05 was used as a cutoff for significant differen-tial expression.
Transcripts that showed significantly increased expression in nhr-23(kry61) comparing to in control male animals.
- WBPaper00064502:nhr-23(kry61)\;spe-44(fx110)_downregulated
DESeq2, fold change > 2 and a BenjaminiHochberg multiple hypothesis-corrected P-value cutoff of 0.05 was used as a cutoff for significant differen-tial expression.
Transcripts that showed significantly decreased expression in nhr-23(kry61);spe-44(fx110) comparing to in control male animals.
- WBPaper00064502:nhr-23(kry61)\;spe-44(fx110)_upregulated
DESeq2, fold change > 2 and a BenjaminiHochberg multiple hypothesis-corrected P-value cutoff of 0.05 was used as a cutoff for significant differen-tial expression.
Transcripts that showed significantly increased expression in nhr-23(kry61);spe-44(fx110) comparing to in control male animals.
- WBPaper00040185:nhr-23(RNAi)_downregulated
Microarray chip data was collected and analyzed by both Affymetrix MAS 5.0 suite software (>= 1.6-fold change in mRNA expression) and Robust Multichip Average (RMA) (>= 1.2-fold change in mRNA expression) as part of the Partek genomics suite software package, all with a p-value less than or equal to 0.05. Normalized data was further analyzed and visualized with Genespring software (Agilent Technologies, Santa Clara, CA).
Genes that showed decreased expression in nhr-23 RNAi experiment.
- WBPaper00051304:CEH-23_repressed
Identified by 1 class SAM with FDR=0.59, 1.5 fold gene cutoff.
Transcripts that were repressed by CEH-23 by comparing expression between isp-1(qm150) and ceh-23(ms23);isp-1(qm150).
- WBPaper00051304:CEH-23_activating
Identified by 1 class SAM with FDR=0.59, 1.5 fold gene cutoff.
Transcripts that were activated by CEH-23 by comparing expression between isp-1(qm150) and ceh-23(ms23);isp-1(qm150).
- WBPaper00065623:23
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 23 expressed in: Intestine middle.
- WBPaper00044743:wdr-23_neuron_upregulated
Differentially expressed genes at false discovery rate (FDR) of 0.05 were identified using the Cuffdiff module of the Cufflinks package.
Genes that showed increased mRNA expression in wdr-23(tm1817) comparing to in N2, and was rescued in wdr-23(tm1817);nuIs225[Pmyo-2::GFP, Psnb-1::WDR-23a].