- WBPaper00065623:128
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 128 expressed in: RME.
- WBPaper00024970:GABAergic_neuron_specific
Genes with > 3.0 fold differential expression.
Genes enriched in GABAergic neurons by comparing GABAergic neurons collected via FACS purification from juIs76 (with Punc-25-GFP reporter construct marking DD and RME GABAergic neurons) and juIs14 (with Pacr-2-GFP reporter marking DA and DB cholinergic motor neurons as well as other neurons) with total cells. The FACS purification therefore resulted in 50-fold enrichment of GABAergic neurons.
- WBPaper00065945:global-rpoa-2(-)_upregulated_transcript
DESeq2, fold change >= 2, FDR < 0.05.
Transcripts that showed significantly increased expression in global RPOA-2-depleted L1 animals (degron-GFP-rpoa-2;eft-3p-TIR1, +IAA), compared to controls (degron-GFP-rpoa-2,+IAA).
- WBPaper00045217:prg-1_progressively_regulated
Genes with more than 2-fold change in expression level are considered differentially expressed.
Genes altered by more than 2-Fold in late versus early generation prg-1 mutants and prg-1; daf-2 mutants. Samples include prg-1(pk2290), prg-1(n4357), prg-1(tm872), prg-1(pk2290); daf-2(e1368), prg-1(pk2290); daf-2(e1370), prg-1(tm872); daf-2(e1370), prg-1(tm872); daf-2(m41).
- WBPaper00065945:epidermis-rpoa-2(-)_upregulated_protein
DEP, fold change >= 2, p-value < 0.05.
Proteins that showed significantly increased expression in epidermis RPOA-2-depleted L1 animals (degron-GFP-rpoa-2;col-10p-TIR1, +IAA), compared to controls (degron-GFP-rpoa-2,+IAA).