- WBPaper00065623:120
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 120 expressed in: OLQ.
- WBPaper00060634:unc-120(st364)_downregulated
Differentially expressed genes (defined by false discovery rate (FDR) step up <= 0.05, fold change >1.5) were identified by Gene-Specific Analysis.
Transcripts that showed significantly decreased expression in unc-120(st364) comparing to in N2 animals.
- WBPaper00060634:unc-120(st364)_upregulated
Differentially expressed genes (defined by false discovery rate (FDR) step up <= 0.05, fold change >1.5) were identified by Gene-Specific Analysis.
Transcripts that showed significantly increased expression in unc-120(st364) comparing to in N2 animals.
- WBPaper00045774:clk-1_upregulated_CoQ10_dependent
Fold-changes of intensities were calculated from the arithmetic mean of gene expression values between experimental and corresponding control group. Fold change >= 1.5 was used as cut-off.
Up-regulated genes (fold change > 1.5) rescued by CoQ10 supplementation (80-120 %) in two CoQ-deficient clk-1 mutant strains (e2519, qm30) compared to wild types N2.
- WBPaper00062684:pathogen_upregulated_CB4856
DESeq2 (v.3.1.0), adjusted P-value < 0.05 and fold change >= 2.
Transcripts in CB4856 animals that showed significantly increased expression across all pathogens (S. epidermidis, P. rettgeri, P. aeruginosa, or S. aureus vs. OP50)
- WBPaper00062684:pathogen_upregulated_N2
DESeq2 (v.3.1.0), adjusted P-value < 0.05 and fold change >= 2.
Transcripts in N2 animals that showed significantly increased expression across all pathogens (S. epidermidis, P. rettgeri, P. aeruginosa, or S. aureus vs. OP50)
- WBPaper00062684:pathogen_downregulated_N2
DESeq2 (v.3.1.0), adjusted P-value < 0.05 and fold change >= 2.
Transcripts in N2 animals that showed significantly decreased expression across all pathogens (S. epidermidis, P. rettgeri, P. aeruginosa, or S. aureus vs. OP50)
- WBPaper00045774:clk-1_downregulated_CoQ10_dependent
Fold-changes of intensities were calculated from the arithmetic mean of gene expression values between experimental and corresponding control group. Fold change >= 1.5 was used as cut-off.
Down-regulated genes (fold change > 1.5) rescued by CoQ10 supplementation (80-120 %) in two CoQ-deficient clk-1 mutant strains (e2519, qm30) compared to wild types N2.