- WBPaper00065623:41
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 41 expressed in: Amphid and phasmid sheath.
- WBPaper00050903:mir-35-41(nDf50)_25C_downregulated
Genes listed exhibited a fold change >= 1.5, with q-value <= 0.5 (Storey multiple testing correction with bootstrapping).
Probes that showed significantly decreased expression in mir-35-41(nDf50) comparing to in N2 at 25C.
- WBPaper00050903:mir-35-41(nDf50)_20C_downregulated
Genes listed exhibited a fold change >= 1.5, with q-value <= 0.5 (Storey multiple testing correction with bootstrapping).
Probes that showed significantly decreased expression in mir-35-41(nDf50) comparing to in N2 at 20C.
- WBPaper00050903:mir-35-41(nDf50)_25C_upregulated
Genes listed exhibited a fold change >= 1.5, with q-value <= 0.5 (Storey multiple testing correction with bootstrapping).
Probes that showed significantly increased expression in mir-35-41(nDf50) comparing to in N2 at 25C.
- WBPaper00050903:mir-35-41(nDf50)_20C_upregulated
Genes listed exhibited a fold change >= 1.5, with q-value <= 0.5 (Storey multiple testing correction with bootstrapping).
Probes that showed significantly increased expression in mir-35-41(nDf50) comparing to in N2 at 20C.
- WBPaper00061527:ima-1_20458-bath-41
All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform.
Coexpression clique No. 271, ima-1_20458-bath-41, on the genome-wide coexpression clique map for the nematode GPL200 platform.
- WBPaper00061527:col-117-col-167_1015
All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform.
Coexpression clique No. 41, col-117-col-167_1015, on the genome-wide coexpression clique map for the nematode GPL200 platform.