- WBPaper00065623:101
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 101 expressed in: RIV.
- WBPaper00049626:UNC-75_target
N.A.
mRNAs that bind with neuronally expressed FLAG-tagged UNC-75 in unc-75(null) mutants CZ14662[unc-75(e950); Prgef-1-UNC-75S(juIs369)], according to CLIP-seq analysis.
- WBPaper00050094:mes-2(bn11)_downregulated
Fold change > 2.
Transcripts that showed significantly decreased expression in the dissected gonads of mes-2(bn11) unc-4(e120)(II), comparing to in the dissected gonads of unc-4(e120)(II)
- WBPaper00050094:mes-2(bn11)_upregulated
Fold change > 2.
Transcripts that showed significantly increased expression in the dissected gonads of mes-2(bn11) unc-4(e120)(II), comparing to in the dissected gonads of unc-4(e120)(II)
- WBPaper00061527:unc-116_2109-zfp-1_3976
All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform.
Coexpression clique No. 101, unc-116_2109-zfp-1_3976, on the genome-wide coexpression clique map for the nematode GPL200 platform.
- WBPaper00050496:unc-39(hp701)_regulated
DESeq
Genes regulated by unc-39(hp701). Authors compared genes enriched in FACS sorted GFP+ cells (RID, ALA, AIY, CAN and a sheath cell) vs. whole animal in WT hpIs202[Pceh-10GFP] (WT enriched sets), and genes enriched in FACS sorted GFP+ cells (ALA, AIY, CAN and a sheath cell) vs. whole animal in unc-39(hp701) hpIs202[Pceh-10GFP] (unc-39 enriched sets) at L2 larva stage. This set of genes are WT enriched but not unc-39 enriched, suggesting they are enriched in RID neurons.
- WBPaper00060764:swsn-9(ok1354)_downregulated
DESeq2, FDR<0.05 and fold-change 2. (Threshold set by WormBase curator.)
Transcripts that showed significantly decreased expression in RA629 swsn-9(ok1354);rdIs49[Cb-unc-119] comparing to in RA577 swsn-9(ok1354); rdIs52 [Pric-19::swsn-9::gfp; Cb-unc-119] (swsn-9 neuronal rescue) animals at young adult worms.