WBPaper00027022:tax-6(jh107)_upregulated The gel image was analyzed with Melanie IV software (GeneBio,Geneva, Switzerland). Variance analysis of spot volume and comparisons of mean values of samples from mutant vs. wild-type worms were performed using SAS statistical software, with a significance level of p < 0.05.
Proteins up-regulated more than twofold in tax-6(jh107) mutants.
WBPaper00027022:tax-6(jh107)_downregulated The gel image was analyzed with Melanie IV software (GeneBio,Geneva, Switzerland). Variance analysis of spot volume and comparisons of mean values of samples from mutant vs. wild-type worms were performed using SAS statistical software, with a significance level of p < 0.05.
Proteins down-regulated more than twofold in tax-6(jh107) mutants.
WBPaper00038172:tax-6null_down_regulated To identify genes that were significantly differentially expressed between each mutant and the control, linear modelling and empirical Bayes analysis was performed using the limma package. Limma computes an empirical Bayes adjustment for the t-test (moderated t-statistic), which is more robust than the standard two-sample t-test comparisons. To correct for multiple testing, Benjamin and Hochbergs method to control for false discovery rate was used. Genes with an adjusted P value of 0.05 or smaller and a fold-change in expression larger than twofold were considered differentially expressed.
Genes down regulated in tax-6(ok2065) comparing to in N2.
WBPaper00038172:tax-6null_up_regulated To identify genes that were significantly differentially expressed between each mutant and the control, linear modelling and empirical Bayes analysis was performed using the limma package. Limma computes an empirical Bayes adjustment for the t-test (moderated t-statistic), which is more robust than the standard two-sample t-test comparisons. To correct for multiple testing, Benjamin and Hochbergs method to control for false discovery rate was used. Genes with an adjusted P value of 0.05 or smaller and a fold-change in expression larger than twofold were considered differentially expressed.
Genes up regulated in tax-6(ok2065) comparing to in N2.