- WBPaper00065623:18
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 18 expressed in: Oocytes.
- WBPaper00061699:daf-18(ok480)_downregulated
edgeR, p-value < 0.05, fold change > 2.
Transcripts that showed significantly decreased expression in strain GC1459 containing daf-18(ok480) comparing to control strain GC1171.
- WBPaper00061699:daf-18(ok480)_upregulated
edgeR, p-value < 0.05, fold change > 2.
Transcripts that showed significantly increased expression in strain GC1459 containing daf-18(ok480) comparing to control strain GC1171.
- WBPaper00061952:daf-18(nr2037)_downregulated
Differentially expressed genes (fold change > 2 and adjusted p value < 0.05) were identified by using DESeq2 (v.1.22.2).
Transcripts that showed significantly decreased expression in daf-2(e1370); daf-18(nr2037) comparing to in daf-2(e1370) animals.
- WBPaper00061952:daf-18(yh1)_downregulated
Differentially expressed genes (fold change > 2 and adjusted p value < 0.05) were identified by using DESeq2 (v.1.22.2).
Transcripts that showed significantly decreased expression in daf-2(e1370); daf-18(yh1) comparing to in daf-2(e1370) animals.
- WBPaper00061952:daf-18(yh1)_upregulated
Differentially expressed genes (fold change > 2 and adjusted p value < 0.05) were identified by using DESeq2 (v.1.22.2).
Transcripts that showed significantly increased expression in daf-2(e1370); daf-18(yh1) comparing to in daf-2(e1370) animals.
- WBPaper00061952:daf-18(nr2037)_upregulated
Differentially expressed genes (fold change > 2 and adjusted p value < 0.05) were identified by using DESeq2 (v.1.22.2).
Transcripts that showed significantly increased expression in daf-2(e1370); daf-18(nr2037) comparing to in daf-2(e1370) animals.
- WBPaper00061527:Y39G10AR.18_4775-gld-4
All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform.
Coexpression clique No. 72, Y39G10AR.18_4775-gld-4, on the genome-wide coexpression clique map for the nematode GPL200 platform.