- WBPaper00049495:starvation-refeeding_regulated
t-tests was performed for each probe set from biological replicates in each class. Statistical significance for multivariate analysis to assess probe set specific false discovery rates (FDR) was performed by estimating the q-values, using the Bioconductor q-value package.
Genes whose expression changed significantly by starvation and refeeding.
- WBPaper00042477:RSR-2_complex
Percolator (semi-supervised learning machine) was used at constant 0.01% FDR. Percolator assigns a q-value to each spectrum, which is defined as the minimal FDR at which the identification is deemed correct. These q values are estimated using the distribution of scores from decoy database search, and the q-value threshold was set to <0.01 to validate any peptide.
Proteins contained in RSR-2 complex, according to immunoprecipitation using anti-RSR-2, and MudPIT, liquid chromatography and mass spectrometry.