- WBPaper00055311:ppa-daf-19_upregulated
Differentially expressed genes were identified by the program cuffdiff (version 2.2.1) from the comparison of both Ppa-daf-19 alleles with two wildtype control samples. The sets of up- and down-regulated genes (FDR corrected p-value <0.05).
Transcripts that showed significantly increased expression in ppa-daf-19(tu1035) and ppa-daf-19(tu1124) comparing to RS2333 wild type control samples.
- WBPaper00055311:ppa-daf-19_downregulated
Differentially expressed genes were identified by the program cuffdiff (version 2.2.1) from the comparison of both Ppa-daf-19 alleles with two wildtype control samples. The sets of up- and down-regulated genes (FDR corrected p-value <0.05).
Transcripts that showed significantly decreased expression in ppa-daf-19(tu1035) and ppa-daf-19(tu1124) comparing to RS2333 wild type control samples.
- WBPaper00065623:19
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 19 expressed in: sh3_sh4 (gonadal sheath proximal).
- WBPaper00049635:dop-1(vs100)_upregulated
EdgeR with a Benjamini and Hochberg correction. Transcriptions that showed more than 1.5-fold of change in expression, as well as FDR-adjusted q-value < 0.01 were considered differentially expressed.
Transcripts that showed significantly increased expression in dop-1(vs100); [Pcol-19-UbG76V-GFP] comparing to in control animal odIs77[Pcol-19-UbG76V-GFP]
- WBPaper00049635:dop-1(vs100)_downregulated
EdgeR with a Benjamini and Hochberg correction. Transcriptions that showed more than 1.5-fold of change in expression, as well as FDR-adjusted q-value < 0.01 were considered differentially expressed.
Transcripts that showed significantly decreased expression in dop-1(vs100); [Pcol-19-UbG76V-GFP] comparing to in control animal odIs77[Pcol-19-UbG76V-GFP]
- WBPaper00033131:dapk-1_upregulated
N.A.
Genes upregulated in L4 larva of dapk-1(ju4) worms. The dapk-1 mutant transcriptional profile overlapped strikingly with that of animals infected with Drechmeria (19/303 genes in common with the top 419 Drechmeria-up-regulated.
- WBPaper00060764:swsn-9(ok1354)_upregulated
DESeq2, FDR<0.05 and fold-change 2. (Threshold set by WormBase curator.)
Transcripts that showed significantly increased expression in RA629 swsn-9(ok1354);rdIs49[Cb-unc-119] comparing to in RA577 swsn-9(ok1354); rdIs52 [Pric-19::swsn-9::gfp; Cb-unc-119] (swsn-9 neuronal rescue) animals at young adult worms.
- WBPaper00060764:swsn-9(ok1354)_downregulated
DESeq2, FDR<0.05 and fold-change 2. (Threshold set by WormBase curator.)
Transcripts that showed significantly decreased expression in RA629 swsn-9(ok1354);rdIs49[Cb-unc-119] comparing to in RA577 swsn-9(ok1354); rdIs52 [Pric-19::swsn-9::gfp; Cb-unc-119] (swsn-9 neuronal rescue) animals at young adult worms.