- WBPaper00054626:NO_upregulated
Cuffdiff version 2.2.1
Transcripts that showed significantly increased expression after treated with 10uM NO-donor DNIC-1a (Fe2(u-SR2)(NO4)) for 15 min and then transferred back to NGM plates for 4 hours before being collected, comparing to animals treated with M9 buffer.
- WBPaper00061527:Y71G12B.18-K06H6.1
All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform.
Coexpression clique No. 69, Y71G12B.18-K06H6.1, on the genome-wide coexpression clique map for the nematode GPL200 platform.
- WBPaper00061527:myo-3-Y71G12B.11_22540
All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform.
Coexpression clique No. 165, myo-3-Y71G12B.11_22540, on the genome-wide coexpression clique map for the nematode GPL200 platform.