- WBPaper00062518:atf-4_regulated
To analyze the differential expressed genes, authors compared atf-4(tm4397) and ldIs119 to wild type using Degust with the following settings: RPKM with minimum 5 counts using edgeR with a false discovery rate (FDR) of 0.1 and an absolute log fold change (FC) of 1 relative to WT.
Most regulated genes by atf-4(tm4397) and ATF-4 overexpression transgene ldIs119 comparing to N2.
- WBPaper00065945:global-rpoa-2(-)_upregulated_transcript
DESeq2, fold change >= 2, FDR < 0.05.
Transcripts that showed significantly increased expression in global RPOA-2-depleted L1 animals (degron-GFP-rpoa-2;eft-3p-TIR1, +IAA), compared to controls (degron-GFP-rpoa-2,+IAA).