- WBPaper00048637:lin-35(n745)_starvation_upregulated
Statistical t-test: P < 0.015 for lin-35(n745) analysis with a threshold of 2-fold ratio of mis-regulation.
Genes with significantly increased expression in lin-35(n745) comparing to in N2 in starvation condition.
- WBPaper00048637:lin-35(n745)_starvation_downregulated
Statistical t-test: P < 0.015 for lin-35(n745) analysis with a threshold of 2-fold ratio of mis-regulation.
Genes with significantly decreased expression in lin-35(n745) comparing to in N2 in starvation condition.
- WBPaper00065623:35
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 35 expressed in: Mature sperm.
- WBPaper00051304:CEH-23_repressed
Identified by 1 class SAM with FDR=0.59, 1.5 fold gene cutoff.
Transcripts that were repressed by CEH-23 by comparing expression between isp-1(qm150) and ceh-23(ms23);isp-1(qm150).
- WBPaper00051304:CEH-23_activating
Identified by 1 class SAM with FDR=0.59, 1.5 fold gene cutoff.
Transcripts that were activated by CEH-23 by comparing expression between isp-1(qm150) and ceh-23(ms23);isp-1(qm150).
- WBPaper00040876:mir-35_downregulated
The raw data was normalized and t-statics were computed using R and Bioconductor with the affy package and Benjamini-Hoch-berg (BH) correction method for multiple comparisons. RNA levels that changed at least 1.5-fold with a probability of p < 0.005 after BH correction were considered significantly different in mir-35(gk262) mutants relative to wild-type.
Genes with expression level down regulated in mir-35 mutants comparing with N2.