- WBPaper00004966:beta-Naphthoflavone_induced
Differentially Expressed C. elegans CYP Genes Induced by beta-Naphthoflavone. Differential hybridization was performed using mRNA samples isolated from beta-naphthoflavone- and DMSO-treated worm populations, respectively.
- WBPaper00065623:14
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 14 expressed in: Differentiated germ.
- WBPaper00034739:RIL17lessRIL14
The normalised data were analysed using a two-way ANOVA, testing for each gene the effects of LINE (N2, DR1350, RIL-14, RIL-17), TREATMENT (non-dauer vs dauer larva-inducing) and the LINE TREATMENT interaction, using a published PERL script.
Genes that showed lower expression in RIL-17 than in RIL-14.
- WBPaper00034739:RIL17moreRIL14
The normalised data were analysed using a two-way ANOVA, testing for each gene the effects of LINE (N2, DR1350, RIL-14, RIL-17), TREATMENT (non-dauer vs dauer larva-inducing) and the LINE TREATMENT interaction, using a published PERL script.
Genes that showed higher expression in RIL-17 than in RIL-14.
- WBPaper00061527:cyp-14A4-cyp-13A4
All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform.
Coexpression clique No. 102, cyp-14A4-cyp-13A4, on the genome-wide coexpression clique map for the nematode GPL200 platform.
- WBPaper00061527:cyp-33C6-cyp-35B2
All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform.
Coexpression clique No. 32, cyp-33C6-cyp-35B2, on the genome-wide coexpression clique map for the nematode GPL200 platform.
- WBPaper00066004:ceh-14(ch3)_upregulated
DESeq2(1.36.0), fold change > 2, FDR < 0.05.
Transcripts that showed significantly increased expression in ceh-14(ch3) comparing to in N2 at L4 larva stage.
- WBPaper00057347:nhr-14(tm1473)_upreglated
Useq 8.7.4, fold change > 2, adjusted p-value < 0.05.
Transcripts that showed significantly increased expression in nhr-14(tm1473) comparing to in N2 at L4 larva stage.