- WBPaper00055344:hypoxia_regulated_HIF-1_independent
DESeq2 p-value <0.05, expression of hypoxia vs. normxia >= 2, expression in egl09(sa307) vs N2 < 2, expression of egl-9(sa307); hif-1(ia04) vs N2 <= 2.
Transcripts that showed significantly increased expression after hypoxia in an egl-9 / hif-1 independent manner.
- WBPaper00040412:germline-regulated_daf-16_target
All lists used an Fs:Ptab 0.01 cutoff.
Genes that were regulated by DAF-16 in response to germline loss, identified by comparing differentially expression genes between glp-1(e2141ts, 25C) vs. glp-1(e2141ts, 20C) and daf-16;glp-1(e2141ts, 25C) vs. daf-16;glp-1(e2141ts, 20C).
- WBPaper00038421:egl-4(lf)_upregulated
Data was analyzed using the R statistical environment. CEL files resulting from array analysis were interpreted and normalized using RMA. The linear modeling package Limma was used to determine significant gene expression differences based on a moderated t-statistic.
Top 10 differentially expressed genes with expression repressed in egl-4(gf) and activated in egl-4(lf) animals.