- WBPaper00056218:daf-16(mu86)_upregulated_Day5
DESeq2 (v1.18.1), ajusted p-value < 0.05
Transcripts that showed significantly increased expression in daf-16(mu86);fer-15(b26ts) comparing to in fer-15(b26ts) at 4-day or 5-day post L4 adult hermaphrodite stage.
- WBPaper00056218:daf-16(mu86)_downregulated_Day5
DESeq2 (v1.18.1), ajusted p-value < 0.05
Transcripts that showed significantly decreased expression in daf-16(mu86);fer-15(b26ts) comparing to in fer-15(b26ts) at 4-day or 5-day post L4 adult hermaphrodite stage.
- WBPaper00059664:srbc-48(ac23)_downregulated
DESeq2, FDR <0.05, fold change > 2.
Transcripts that showed significantly decreased expression in srbc-48(ac23);kyIs262;fer-1(b232ts) comparing to in kyIs262;fer-1(b232ts), 24h after infection with P.aeruginosa.
- WBPaper00059664:srbc-48(ac23)_upregulated
DESeq2, FDR <0.05, fold change > 2.
Transcripts that showed significantly increased expression in srbc-48(ac23);kyIs262;fer-1(b232ts) comparing to in kyIs262;fer-1(b232ts), 24h after infection with P.aeruginosa.
- WBPaper00054479:L.fermentum_upregulated
fold change > 5 and p-value < 0.05
Transcripts that showed more than 5 fold increase of expression in fer-15;fem-1 worms after fed by Lactobacillus fermentum strain JDFM216 for 24 hours compared to Escherichia coli OP50 fed control.
- WBPaper00056218:daf-16(mu86)_upregulated_Day3
DESeq2 (v1.18.1), ajusted p-value < 0.05
Transcripts that showed significantly increased expression in daf-16(mu86);fer-15(b26ts) comparing to in fer-15(b26ts) at 2-day or 3-day post L4 adult hermaphrodite stage.
- WBPaper00056218:daf-16(mu86)_downregulated_Day7
DESeq2 (v1.18.1), ajusted p-value < 0.05
Transcripts that showed significantly decreased expression in daf-16(mu86);fer-15(b26ts) comparing to in fer-15(b26ts) at 6-day or 7-day post L4 adult hermaphrodite stage.
- WBPaper00056218:daf-16(mu86)_upregulated_Day7
DESeq2 (v1.18.1), ajusted p-value < 0.05
Transcripts that showed significantly increased expression in daf-16(mu86);fer-15(b26ts) comparing to in fer-15(b26ts) at 6-day or 7-day post L4 adult hermaphrodite stage.
- WBPaper00056218:daf-16(mu86)_downregulated_Day3
DESeq2 (v1.18.1), ajusted p-value < 0.05
Transcripts that showed significantly decreased expression in daf-16(mu86);fer-15(b26ts) comparing to in fer-15(b26ts) at 2-day or 3-day post L4 adult hermaphrodite stage.
- WBPaper00035197:fer-1_downregulated
Data across the wild-type series was analyzed using the significance analysis of microarray data (SAM) algorithm to calculate the false discovery rate (FDR). Authors calculated expression ratios of wild-type/fer-1 mutants, and genes that exhibited a <= 0.1% FDR, >= 4-fold change in both fer-1 mutants, and differed by <= 2-fold between hc1 and hc24 were considered to be fer-1-regulated genes.
Genes downregulated by fer-1 mutants hc1 and hc24, with > 4 fold change in expression level.