- WBPaper00061340:Germline
Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm.
Top 300 transcripts enriched in germ line according to single cell RNAseq.
- WBPaper00065623:12
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 12 expressed in: Mitotic germ cells .
- WBPaper00065623:2
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 2 expressed in: Meiotic germ cells.
- WBPaper00065623:8
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 8 expressed in: Mitotic germ cells .
- WBPaper00065623:22
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 22 expressed in: Mitotic germ cells .
- WBPaper00065623:3
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 3 expressed in: Apoptotic germ cells.
- WBPaper00065623:21
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 21 expressed in: Mitotic germ cells .
- WBPaper00032097:CGH-1-associated-mRNA
At least 3 fold enrichment of CGH-1 vs IgG control.
mRNAs associated with germ line CGH-1 complex, with > 3-fold increase in expression level in microrarray analysis of RNA IPs with CGH-1 relative to IgG controls.
- WBPaper00034739:TreatmentAffectedGenes
The normalised data were analysed using a two-way ANOVA, testing for each gene the effects of LINE (N2, DR1350, RIL-14, RIL-17), TREATMENT (non-dauer vs dauer larva-inducing) and the LINE TREATMENT interaction, using a published PERL script.
Genes with expression significantly affected by TREATMENT (non-dauer vs dauer), or TREATMENT X LINE at p < 0.001.