- WBPaper00065623:95
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 95 expressed in: RIC.
- WBPaper00064727:daf-2(e1370)_upregulated
NOIseq(v2.34.0), fold change > = 1.5, Differentially expressed genes (DEGs) were defined as having a probability of differentialexpression > 95%.
Transcripts that showed significantly increased expression in daf-2(e1370) comparing to in control animals.
- WBPaper00064727:daf-2(e1370)_downregulated
NOIseq(v2.34.0), fold change > = 1.5, Differentially expressed genes (DEGs) were defined as having a probability of differentialexpression > 95%.
Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in control animals.
- WBPaper00042234:xpa-1_upregulated
After pre-processing and normalization, the Student t-test was executed to reveal transcripts statistically significantly regulated at the 95% confidence level (P < 0.05) between xpa-1 and WT.
Genes that showed increased expression in xpa-1(ok698) comparing with N2 in mixed stages.
- WBPaper00031097:unc-95(su33)_upregulated
Genes with differences corresponding to P-value < 0.01 in either the high- or the low-photomultiplier scans (Students t-test) in all replicates were considered to be significantly regulated.
Genes that showed more than 2 fold increase of expression in unc-95(su33) comparing with N2.
- WBPaper00005432:xbp-1(zc12)_downregulated
A t-test was used to determine the probability that differences in treatment-induced levels of mRNA between the wild type and xbp-1 mutant were due to chance. A 95% confidence limit was applied.
Genes whose activation by tunicamycin treatment is attenuated in xbp-1(zc12)III mutant animals.
- WBPaper00005432:xbp-1(zc12)_upregulated
A t-test was used to determine the probability that differences in treatment-induced levels of mRNA between the wild type and xbp-1 mutant were due to chance. A 95% confidence limit was applied.
Genes whose activation by tunicamycin treatment is enhanced in xbp-1(zc12)III mutant animals.
- WBPaper00061527:pqn-42_3632-pqn-42_9157
All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform.
Coexpression clique No. 8, pqn-42_3632-pqn-42_9157, on the genome-wide coexpression clique map for the nematode GPL200 platform.
- cgc4489_hermaphrodite_enriched_neuronal_genes
Authors first used a Student t test to select only those genes that were significantly regulated using both the observed standard deviation (local SD) and the global standard deviation compiled from a large number of different DNA microarray experiments (global SD). Authors selected genes that are sex regulated above the 95% confidence level.
hermaphrodite-enriched neuronal genes