- WBPaper00059027:neuron-synapses_enriched
DESeq2, FDR < 0.05
Transcripts enriched at neuron synapses by comparing presynaptic and somatic cell fragments labeled with different protein markers and sorted by FACS.
- WBPaper00059027:neuron-synapses_depleted
DESeq2, FDR < 0.05
Transcripts depleted at neuron synapses (enriched at the somatic fragments) by comparing presynaptic and somatic cell fragments labeled with different protein markers and sorted by FACS.
- WBPaper00056826:SGP_biased
DESeq2, fold change >= 2, FDR <= 0.01.
Transcripts that showed significantly higher expression in somatic gonad precursor cells (SGP) vs. head mesodermal cells (hmc).
- WBPaper00056826:hmc_biased
DESeq2, fold change >= 2, FDR <= 0.01.
Transcripts that showed significantly lower expression in somatic gonad precursor cells (SGP) vs. head mesodermal cells (hmc).
- WBPaper00044760:somatic_specific
Authors extracted all genes with more than 25 mapped reads and computed fold changes for all gene loci between wild type and mutants. The group of genes with 4-fold up-regulation in wild type was considered to be specifically expressed in the germline, while genes with 4-fold down-regulation in wild type where assumed to be specific to somatic cell lineages.
Genes specifically expressed in somatic tissue when comparing RNAseq data of N2 to glp-4(bn2ts).
- WBPaper00044760:germline_specific
Authors extracted all genes with more than 25 mapped reads and computed fold changes for all gene loci between wild type and mutants. The group of genes with 4-fold up-regulation in wild type was considered to be specifically expressed in the germline, while genes with 4-fold down-regulation in wild type where assumed to be specific to somatic cell lineages.
Genes specifically expressed in germline when comparing RNAseq data of N2 to glp-4(bn2ts).
- WBPaper00056161:male_enriched_siRNA
DESeq2 v1.13.8, fold change > 2, FDR < 0.01.
siRNAs that showed significantly lower expression (log2fold > 2, padj < 0.01) in hermaphrodite gonad (somatic gonad plus germine) than in male gonad (somatic gonad plus germine).
- WBPaper00056161:hermaphrodite_enriched_piRNA
DESeq2 v1.13.8, fold change > 2, FDR < 0.01.
piRNAs that showed significantly higher expression (log2fold > 2, padj < 0.01) in hermaphrodite gonad (somatic gonad plus germine) than in male gonad (somatic gonad plus germine).
- WBPaper00056161:hermaphrodite_enriched_siRNA
DESeq2 v1.13.8, fold change > 2, FDR < 0.01.
siRNAs that showed significantly higher expression (log2fold > 2, padj < 0.01) in hermaphrodite gonad (somatic gonad plus germine) than in male gonad (somatic gonad plus germine).
- WBPaper00056161:male_enriched_piRNA
DESeq2 v1.13.8, fold change > 2, FDR < 0.01.
piRNAs that showed significantly lower expression (log2fold > 2, padj < 0.01) in hermaphrodite gonad (somatic gonad plus germine) than in male gonad (somatic gonad plus germine).