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[
2008]
In this chapter, selected aspects of the early embryogenesis of five representatives from different branches of the phylogenetic tree are compared with C. elegans and the impact of the observed differences for evolutionary considerations are discussed. Following a brief reference to phylogeny, basic features of early embryogenesis of C. elegans will be summarised to aid in appreciating the data from other nematodes reported subsequently.
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[
1992]
Caenorhabditis elegans is a small soil nematode which is currently being extensively studied to discern general principles of how genes control development. The short life cycle, ability to culture in quantities sufficient for biochemical work, well-developed genetics, small cell number for a rather sophisticated animal, and rapidly increasing possibilities for molecular genetics are features that make this species a very productive system
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[
WormBook,
2006]
A distinctive feature of polarized epithelial cells is their specialized junctions, which contribute to cell integrity and provide platforms to orchestrate cell shape changes. The chapter discusses the composition and assembly of C. elegans cell-cell and cell-extracellular matrix junctions, proteins that anchor the cytoskeleton and mechanisms involved in establishing epithelial polarity. The focus remains cellular and does not properly deal with epithelial cells in the context of the developing embryo.
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[
1989]
Classical embryological studies of nematodes, primarily by Van Beneden and Boveri near the turn of the century, have made lasting contributions to our understanding of embryonic development (1). However, during most of this century, nematodes have been eclipsed as a model system for embryology by organisms with more tractable embryos such as sea urchins, insects, amphibians, birds, and mice. Two features of the free-living soil nematode Caenorhabditis elegans have returned nematodes to a prominent place in embryological investigations: its suitability for genetic analysis and its invariant and completely described cell lineage. These two features, combined with technological advances in microscopy and molecular biology, are providing the opportunity to combine experimental embryology with genetic and molecular analyses of embryonic development at the level of individual cells in a single organism. This chapter focuses on efforts to understand the molecular and cellular events of early development in C. elegans with particular emphasis on events relating to the determination of embryonic cell fates. Extensive coverage of the various contributions that the study of Caenorhabditis has made to our knowledge of developmental biology can be found in ref. 2.
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[
WormBook,
2005]
The normal karyotype of Caenorhabditis elegans, with its five pairs of autosomes and single pair of X chromosomes, is described. General features of chromosomes and global differences between different chromosomal regions are discussed. Abnormal karyotypes, including duplications, deficiencies, inversions, translocations and chromosome fusions are reviewed. The effects of varying ploidy and of varying gene dosage are summarized. Dosage-sensitive genes seem to be rare in C. elegans, and the organism is able to tolerate substantial levels of aneuploidy. However, autosomal hemizygosity for more than about 3 % of the total genome may be incompatible with viability.
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[
WormBook,
2005]
Receptors of the LIN-12 /Notch family mediate cell-cell interactions during animal development, and aberrations in LIN-12 /Notch signaling have been implicated in human disease. Studies in C. elegans have been instrumental in defining the basic features of the LIN-12 /Notch pathway, the role of LIN-12 /Notch proteins as receptors for intercellular signals, the mechanism of signal transduction, and the regulation of LIN-12 /Notch signaling during cell fate decisions. This chapter is focused on detailing how the "awesome power of C. elegans genetics" has identified many core components and modulators of LIN-12 /Notch activity.
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[
Methods Cell Biol,
1995]
The Worm Community System (WCS) is a digital library that contains knowledge about Caenorhabditis elegans, and a software environment that enables the user to interact with the community library across the international computer network, the Internet. The functions of the software environment enable the user to browse, search, and retrieve the existing knowledge of the community. In addition, users may add data and literature to the library for timely dissemination to the research community and for private collaboration with colleagues at local or remote sites. This capacity for dynamically updating information should help to better propagate knowledge across the community. This chapter provides a survey of the system's history, features, and requirements, and describes basic uses of the system.
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[
Lecture Notes in Computer Science,
2005]
The OMA project is a large-scale effort to identify groups of orthologs from complete genome data, currently 150 species. The algorithm relies solely on protein sequence information and does not require any human supervision. It has several original features, in particular a verification step that detects paralogs and prevents them from being clustered together. Consistency checks and verification are performed throughout the process. The resulting groups, whenever a comparison could be made, are highly consistent both with EC assignments, and with assignments from the manually curated database HAMAP. A highly accurate set of orthologous sequences constitutes the basis for several other investigations, including phylogenetic analysis and protein classification.
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[
1981]
This chapter is in part a review of the work of others and in part a summary of recent results from our own laboratory. It attempts to cover the currently available information on apparent neurotransmitters in the small soil nematode Caenorhabditis elegans, whose advantages of genetic manipulability and cellular simplicity have recently gained it some favor in investigations of genetic control mechanisms in neural development (for review, see Riddle, 1978). Particular attention is given to mutants that affect either the level or the action of apparent neurotransmitters, since it seems likely that such mutants may have the most to offer toward the understanding of human genetic neuropathies. The general features of C. elegans are described briefly at the outset, then each apparent neurotransmitter is considered in turn, and finally a few potential implications for other organisms
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[
Methods Cell Biol,
2008]
The Caenorhabditis elegans gonad and early embryo have recently emerged as an attractive metazoan model system for studying cell and developmental biology. The success of this system is attributable to the stereotypical architecture and reproducible cell divisions of the gonad/early embryo, coupled with penetrant RNAi-mediated protein depletion. These features have facilitated the development of visual assays with high spatiotemporal resolution to monitor specific subcellular processes. Assay development has relied heavily on the emergence of methods to circumvent germline silencing to allow the expression of transgenes encoding fluorescent fusion proteins. In this chapter, we discuss methods for the expression and imaging of fluorescent proteins in the C. elegans germline, including the design of transgenes for optimal expression, the generation of transgenic worm lines by ballistic bombardment, the construction of multimarker lines by mating, and methods for live imaging of the gonad and early embryo.