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Nature,
1992]
Supporters of large DNA sequencing projects will take heart (and find much to learn) from the report by J. Sulston and colleagues that appears on page 37 of this issue. Sulston et al. describe the first results of the Caenorhabditis elegans genome sequencing project, and have come up with not only hitherto unknown genes but also with fresh and biologically relevant information.
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Curr Biol,
2014]
The handover from maternal to zygotic control has to be carefully orchestrated. In most animal embryos, maternal products drive early embryogenesis, and the genome of the zygote is only switched on later. However, in the nematode Ascaris the zygotic genome is never silent, and the maternal products are rapidly eliminated.
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[
Science,
1998]
The near completion of the sequence of the C. elegans genome should provide researchers with a gold mine of information on topics ranging from evolution to gene
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Genetics,
2013]
With remarkable speed, the CRISPR-Cas9 nuclease has become the genome-editing tool of choice for essentially all genetically tractable organisms. Targeting specific DNA sequences is conceptually simple because the Cas9 nuclease can be guided by a single, short RNA (sgRNA) to introduce double-strand DNA breaks (DSBs) at precise locations. Here I contrast and highlight protocols recently developed by eight different research groups, six of which are published in GENETICS, to modify the Caenorhabditis elegans genome using CRISPR/Cas9. This reverse engineering tool levels the playing field for experimental geneticists.
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Nature,
1998]
The human genome is predicted to contain between 50,000 and 100,000 genes. To work out what these genes do, an array of techniques is needed to evaluate the protein-protein interactions and biochemical pathways of any gene product. The nematode worm Caenorhabditis elegans is an excellent system for such studies because of its well-understood genetics and development, evolutionary conservation to human genes, small genome size and relatively short life cycle. The 100-megabase-pair genome will be completely sequenced this year, and a total of 17,000 genes have been predicted, many with human counterparts. Approaches used to manipulate gene expression in C. elegans include transposon-mediated deletion, antisense inhibition and direct isolation of deletions after mutagenesis. Although these methods have proved useful, limitations still exist.
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Dev Cell,
2013]
Molecular insights into the genetic control of development have been mainly derived from single gene mutant studies. Francesconi and Lehner (2013) report now in Nature a genome-wide map of natural sequence variants that affect the temporal expression dynamics of thousands of genes during development of the roundworm Caenorhabditis elegans.
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[
Nature,
1994]
On page 32 of this issue, a joint team from the Genome Sequencing Center (St. Louis, USA) and the newly founded Sanger Centre (Hinxton Hall, Cambridge, UK) report a contiguous sequence of over two megabases from chromosome III of the nematode worm, Caenorhabditis elegans. This is the longest contiguous DNA sequence yet determined, and it prompts rumination on how far we have come in the sequencing enterprise, and on how far - and where - we have
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Nat Genet,
2012]
A new study reports a comprehensive survey of genetic diversity in natural populations of the nematode Caenorhabditis elegans. Their analyses suggest that recent chromosome-scale selective sweeps have reduced C. elegans genetic diversity worldwide and strongly structured genetic variation across its genome.
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Genes Dev,
2014]
The PIWI-interacting RNA (piRNA) pathway protects animal germline cells from transposable elements and other genomic invaders. Although the genome defense function of piRNAs has been well established, the mechanisms of their biogenesis remain poorly understood. In this issue of Genes & Development, three groups identify novel factors required for piRNA biogenesis in Caenorhabditis elegans. These works greatly expand our understanding of the piRNA pathway in worms, highlighting both its shared and its unique properties.
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Nat Methods,
2011]
Engineering precise genetic changes in a genome is powerful way to study gene function, and several recent papers describe new applications of gene-editing tools. Working with researchers at Sangamo BioSciences, Howard Hughes Medical Institute investigator Barbara Meyer and her colleagues at the University of California, Berkeley, described the first systems for making targeted genomic modifications in the roundworm Caenorhabditis elegans, a valuable model organism (Wood et al., 2011).