We are interested in isolating mutants that affect lineage specification in the nervous system of the nematode C. elegans.The harsh touch sensory neuron PVD, generated by the postdeirid lineage, can been labeled with two transgenically expressed fluorophores,
ser-2::gfp (otIs138 transgene)(Tsalik et al., 2003) and
dat-1:rfp (vsIs33transgene)(Chase et al., 2004). Using a otIs138; vsIs33 double transgenic strain, we screened for EMS-induced mutations in which both markers fail to be expressed in PVD and isolated two strains in which the majority of animals fail to display reporter expression in PVD (
ot642mutant strain: 56% animals showed no marker expression in PVD expression;
ot575 mutant strain: 71% of animals; n=54).
ot575and
ot642fail to complement each other. Animals that carry these alleles are viable, fertile and display no obvious morphological abnormalities. Both strains were subjected to Illumina whole genome re-sequencing, one in combination with Hawaiian SNP mapping (
ot642)(Doitsidou et al., 2010) the other in combination with variant discovery mapping (
ot575)(Minevich et al., 2012). These two orthogonal mapping approaches revealed that both mutant strains carry the exact same alteration: a loss of 405,058 bp from the extreme left end of the X chromosome (Figure 1).
ot575and
ot642were isolated from separate rounds of screens so these mutants were not progeny of the same initial parent. Each of these strains were isolated with the otIs138[
ser2prom3::gfp]transgene that is also located on chromosome X so it is possible that this transgene somehow contributes to chromosome instability in some way or form.
We confirmed the deletion with PCR primers located within this deletion, which yielded a PCR product from wild-type animals, but not mutant animals. Since the size of the deletions classifies these alleles as deficiencies, we renamed these alleles otDf575and otDf642.
The deletion in otDf575 and otDf642eliminates 50 protein-coding genes (one of them, R04A9.1, which carries the deletion breakpoint, is cut in half), at least 20 pseudogenes and a number of regulatory RNAs, ranging from several 21U RNAs to three miRNA encoding genes,
mir-258.1,
mir-258.2and mir-800. The protein coding genes lost in these strains include a number of different functional categories, including a number of gene regulatory factors: two transcription factors (
elk-2and ceh-93, a homeobox gene), two SET-domain containing chromatin factors (
set-28,
set-33), an argonaute protein (
nrde-3) and the polycomb-group gene,
sor-3.
We find that the
sor-3 locus alone is responsible for the PVD mutant phenotype of otDf575animals, because otDf575fails to complement
sor-3(
bp185) (5/21
ot575/bp185transheterozygous animals show PVD loss) and
sor-3(
bp185) homozygotes show the same PVD mutant phenotype as otDf575and otDf642mutant animals (68% penetrant; n=22).
sor-3codes for a protein containing an MBT repeat domain that displays methylated histone binding activity and exists in the PcG proteins SCM and Sfmbt in other organisms (Yang et al., 2007). Previous work showed that loss of
sor-3leads to expression of ectopic dopaminergic and serotonergic male ray neuron fates (Yang et al., 2007). Furthermore, in
sor-3mutants, the Hox genes
egl-5and lin-39are ectopically expressed outside their usual domain (Yang et al., 2007). Ectopic expression of the
mab-5 gene has previously been shown to eliminate the production of the entire postdeirid lineage (that produces the PVD neuron)(Salser and Kenyon, 1996). We hypothesize that
sor-3 mutants affect PVD neuron differentiation via ectopic expression of endogenous
mab-3.