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WormBase Schema for Model: Variation

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Class

?VariationEvidence#Evidence
NamePublic_nameUNIQUE?Variation_nameXREFPublic_name_for
Other_name?Variation_nameXREFOther_name_for#Evidence
Rearrangement?RearrangementXREFVariation
Sequence_detailsSMapS_parentUNIQUESequenceUNIQUE?SequenceXREFAllele
Flanking_sequencesUNIQUETextUNIQUEText
Mapping_targetUNIQUE?Sequence
Source_locationUNIQUEIntUNIQUE?SequenceUNIQUEIntUNIQUEIntUNIQUE#Evidence
CGH_deleted_probesUNIQUETextUNIQUEText
CGH_flanking_probesUNIQUETextUNIQUEText
Type_of_mutationSubstitutionUNIQUETextUNIQUEText#Evidence
InsertionUNIQUEText#Evidence
DeletionUNIQUEText#Evidence
Tandem_duplication#Evidence
PCR_product?PCR_productXREFVariation
SeqStatusUNIQUENot_sequenced
Sequenced
Pending_curation
Deletion_verificationText#Evidence
Variation_typeEngineered_allele
Allele
SNP
Confirmed_SNP
Predicted_SNP
RFLPReference_strain_digestTextTextText
Polymorphic_strain_digestTextTextText
Transposon_insertion?Transposon_familyXREFIn_variation
Natural_variant
Origin (18)
Linked_to?VariationXREFLinked_to
AffectsGene?GeneXREFAllele#Molecular_change
Predicted_CDS?CDSXREFVariation#Molecular_change
Transcript?TranscriptXREFVariation#Molecular_change
Pseudogene?PseudogeneXREFVariation#Molecular_change
Feature?FeatureXREFAssociated_with_variation
Interactor?InteractionXREFVariation_interactor
Possibly_affects?GeneXREFPossibly_affected_by#Evidence
IsolationDateDateType
MutagenUNIQUEText#Evidence
Forward_geneticsText#Evidence
Reverse_geneticsText#Evidence
Transposon_excision?Transposon_family
Derived_from_variation?VariationXREFDerivative
Derivative?VariationXREFDerived_from_variation
Derived_from_construct?ConstructXREFEngineered_variation
GeneticsGene_class?Gene_classXREFVariation
Mating_efficiencymaleUNIQUEME0_Mating_not_successful#Evidence
ME1_Mating_rarely_successful#Evidence
ME2_Mating_usually_successful#Evidence
ME3_Mating_always_successful#Evidence
hermaphroditeUNIQUEHME0_Mating_not_successful#Evidence
HME1_Mating_rarely_successful#Evidence
HME2_Mating_usually_successful#Evidence
HME3_Mating_always_successful#Evidence
Map?MapXREFVariation#Map_position
Interpolated_map_positionUNIQUE?MapUNIQUEFloat
Mapping_data2_point?2_point_data
Multi_point?Multi_pt_data
Pos_neg_data?Pos_neg_data
In_2_point?2_point_data
In_multi_point?Multi_pt_data
In_pos_neg_data?Pos_neg_data
Marked_rearrangement?RearrangementXREFBy_variation
DescriptionPhenotype?PhenotypeXREFVariation#Phenotype_info
Phenotype_remark?Text#Evidence
Phenotype_not_observed?PhenotypeXREFNot_in_Variation#Phenotype_info
Disease_infoModels_disease?DO_termXREFDisease_model_variation
Disease_model_annotation?Disease_model_annotationXREFVariation
Reference?PaperXREFAllele
Remark?Text#Evidence
MethodUNIQUE?Method
Supporting_dataMovie?MovieXREFVariation#Evidence