WormBase Tree Display for Gene: WBGene00015789
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| WBGene00015789 | SMap | S_parent | Sequence | C15C7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | syx-6 | Person_evidence | WBPerson3132 | |||||
| Sequence_name | C15C7.1 | ||||||||
| Molecular_name | C15C7.1 | ||||||||
| C15C7.1.1 | |||||||||
| CE30865 | |||||||||
| Other_name | CELE_C15C7.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | syx-6 | ||||||||
| DB_info | Database | AceView | gene | XD783 | |||||
| WormQTL | gene | WBGene00015789 | |||||||
| WormFlux | gene | WBGene00015789 | |||||||
| NDB | locus_tag | CELE_C15C7.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00015789|UniProtKB=P83528 | |||||||
| family | PTHR12791 | ||||||||
| NCBI | gene | 259698 | |||||||
| RefSeq | protein | NM_001392741.1 | |||||||
| SwissProt | UniProtAcc | P83528 | |||||||
| TREEFAM | TREEFAM_ID | TF313254 | |||||||
| UniProt_GCRP | UniProtAcc | P83528 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 16 Apr 2010 14:03:06 | WBPerson2970 | Name_change | CGC_name | syx-6 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | syx | ||||||||
| Allele (20) | |||||||||
| Strain | WBStrain00001363 | ||||||||
| WBStrain00002195 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00048848 | ||||||||
| 00048849 | |||||||||
| 00048850 | |||||||||
| 00048851 | |||||||||
| 00048852 | |||||||||
| 00048853 | |||||||||
| 00048854 | |||||||||
| 00048855 | |||||||||
| Contained_in_operon | CEOPX040 | ||||||||
| Ortholog (27) | |||||||||
| Paralog | WBGene00043064 | Caenorhabditis elegans | From_analysis | Panther | |||||
| Structured_description | Automated_description | Predicted to be involved in synaptic vesicle docking. Located in Golgi trans cisterna. Expressed in head. Is an ortholog of human STX10 (syntaxin 10). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C15C7.1 | |||||||
| Corresponding_transcript | C15C7.1.1 | ||||||||
| Other_sequence (25) | |||||||||
| Associated_feature | WBsf034315 | ||||||||
| WBsf662584 | |||||||||
| WBsf1004536 | |||||||||
| WBsf235456 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00040594 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00110491 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00110506 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00110520 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1446 | ||||||||
| Expr4832 | |||||||||
| Expr5267 | |||||||||
| Expr5268 | |||||||||
| Expr13818 | |||||||||
| Expr1025910 | |||||||||
| Expr1036755 | |||||||||
| Expr1144649 | |||||||||
| Expr2017196 | |||||||||
| Expr2035332 | |||||||||
| Drives_construct | WBCnstr00002253 | ||||||||
| WBCnstr00004271 | |||||||||
| WBCnstr00012263 | |||||||||
| WBCnstr00028567 | |||||||||
| Construct_product | WBCnstr00019191 | ||||||||
| WBCnstr00028567 | |||||||||
| WBCnstr00040136 | |||||||||
| Microarray_results (13) | |||||||||
| Expression_cluster (82) | |||||||||
| Interaction (24) | |||||||||
| Map_info | Map | X | Position | -11.6777 | Error | 0.112361 | |||
| Positive | Positive_clone | C15C7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00010295 | ||||||||
| WBPaper00018596 | |||||||||
| WBPaper00030963 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
