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WormBase Tree Display for Gene: WBGene00027983

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Name Class

WBGene00027983SMapS_parentSequencecb25.fpc0129
IdentityVersion2
NameCGC_nameCbr-unc-80From_analysisInferred_from_orthology
Sequence_nameCBG05555
Molecular_name (20)
Other_nameCBG_05555Accession_evidenceNDBHE601419
Public_nameCbr-unc-80
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:57WBPerson1971EventImportedInitial conversion from brigace
213 Nov 2007 10:03:29WBPerson2970Name_changeCGC_nameCbr-unc-80
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
Allele (15)
RNASeq_FPKMWBls:00000021.24725From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
2.99913From_analysisRNASeq.briggsae.WBls:0000002.control_mean
3.75974From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
3.9904From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
3.07986From_analysisRNASeq.briggsae.WBls:0000002.control_mean
3.32205From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
3.54089From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030.620983From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.865277From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
1.10957From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
0.981304From_analysisRNASeq.briggsae.WBls:0000003.control_mean
1.21336From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000042.48153From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
2.52744From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
2.57335From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
2.66019From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
2.78422From_analysisRNASeq.briggsae.WBls:0000004.control_mean
2.92791From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
3.2781From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000271.5444From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
3.9133From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
4.74394From_analysisRNASeq.briggsae.WBls:0000027.control_mean
8.77412From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
5.81373From_analysisRNASeq.briggsae.WBls:0000027.control_mean
6.34371From_analysisRNASeq.briggsae.WBls:0000027.control_median
9.0231From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000355.28704From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.586248From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
1.55741From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
1.77102From_analysisRNASeq.briggsae.WBls:0000038.control_median
1.88441From_analysisRNASeq.briggsae.WBls:0000038.control_mean
1.98462From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
3.40937From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000413.10509From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
3.32095From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
3.32181From_analysisRNASeq.briggsae.WBls:0000041.control_median
3.32267From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
3.38902From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.80738From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
1.63661From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
2.85017From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
3.00714From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.21302From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:00000631.65888From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.75665From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.14125From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
2.15098From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
2.24551From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
1.67234From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.73964From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
1.94895From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:00001012.57335From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.24416From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
2.75518From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.22979From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Contained_in_operonCBOPA0113
Ortholog (31)
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Cation channel complex component UNC80, N-terminal and UNC80 N-terminal. Is an ortholog of C. elegans unc-80. In C. elegans, unc-80 is involved in several processes, including monoatomic cation homeostasis; positive regulation of locomotion; and response to anesthetic.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG05555a
CBG05555b
CBG05555c
CBG05555d
CBG05555e
CBG05555f
Corresponding_CDS_historyCBG05555:bp194
CBG05555:bp255
Corresponding_transcriptCBG05555a.1
CBG05555b.1
CBG05555c.1
CBG05555d.1
CBG05555e.1
CBG05555f.1
CBG05555f.2
CBG05555f.3
Other_sequence (29)
Experimental_infoExpr_patternExpr1057452
Microarray_resultsGPL8303_CB6_WBGene00027983_A
GPL8303_CB6_WBGene00027983_B
GPL14143_CBG05555_10275-10334_0.939_4_C
GPL14143_CBG05555_10507-10566_0.648_979_B
GPL14143_CBG05555_10613-10672_0.966_1_A
MethodGene