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WormBase Tree Display for Gene: WBGene00032251

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Name Class

WBGene00032251SMapS_parentSequencecb25.fpc2441
IdentityVersion3
NameCGC_nameCbr-unc-52From_analysisInferred_from_orthology
Sequence_nameCBG11064
Molecular_name (24)
Other_nameCBG_11064Accession_evidenceNDBHE601351
CBG_11065
Public_nameCbr-unc-52
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:01WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-unc-52
331 Aug 2016 10:29:43WBPerson4025EventAcquires_mergeWBGene00032252
Acquires_mergeWBGene00032252
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
AlleleWBVar00116389
WBVar00012537
WBVar00116390
WBVar00012542
WBVar00116391
RNASeq_FPKMWBls:0000002104.832From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
11.4046From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
60.9516From_analysisRNASeq.briggsae.WBls:0000002.control_mean
66.6183From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
19.552From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
43.0852From_analysisRNASeq.briggsae.WBls:0000002.control_median
50.6017From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.671223From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
14.1186From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
7.39491From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
12.194From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
8.99461From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000476.3001From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
79.062From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
81.824From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
79.1147From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
79.6154From_analysisRNASeq.briggsae.WBls:0000004.control_mean
80.0226From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
80.8155From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:0000027135.724From_analysisRNASeq.briggsae.WBls:0000027.control_mean
138.245From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
177.687From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
91.2388From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
144.434From_analysisRNASeq.briggsae.WBls:0000027.control_mean
154.405From_analysisRNASeq.briggsae.WBls:0000027.control_median
170.565From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:0000035152.695From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038125.726From_analysisRNASeq.briggsae.WBls:0000038.control_median
129.33From_analysisRNASeq.briggsae.WBls:0000038.control_mean
165.074From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
181.895From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
83.9714From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
86.3787From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:000004123.7137From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
40.7142From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
41.9861From_analysisRNASeq.briggsae.WBls:0000041.control_mean
45.5457From_analysisRNASeq.briggsae.WBls:0000041.control_median
50.3771From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
53.1396From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
31.7671From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
34.8204From_analysisRNASeq.briggsae.WBls:0000041.control_mean
36.2407From_analysisRNASeq.briggsae.WBls:0000041.control_median
9.21076From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006337.0957From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
37.2482From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
37.6495From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
38.1392From_analysisRNASeq.briggsae.WBls:0000063.control_mean
39.2206From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
39.4822From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
38.4351From_analysisRNASeq.briggsae.WBls:0000063.control_median
39.6515From_analysisRNASeq.briggsae.WBls:0000063.control_mean
47.2128From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010166.6183From_analysisRNASeq.briggsae.total_over_all_stages.control_median
72.5004From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
59.8789From_analysisRNASeq.briggsae.total_over_all_stages.control_median
69.2886From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (33)
ParalogWBGene00027029Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027093Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029573Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032168Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032203Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032318Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00039108Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00042278Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00042473Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Immunoglobulin-like domain; Immunoglobulin-like fold; Laminin IV; Laminin-type EGF domain; Immunoglobulin subtype 2; Low-density lipoprotein receptor domain class A; Immunoglobulin domain; Immunoglobulin-like domain superfamily; Laminin EGF domain; Low-density lipoprotein (LDL) receptor class A repeat; Immunoglobulin subtype; Laminin B (Domain IV); and LDL receptor-like superfamily. Is an ortholog of C. elegans unc-52. In C. elegans, unc-52 is involved in several processes, including hemidesmosome assembly; muscle cell cellular homeostasis; and muscle structure development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG11064a
CBG11064b
CBG11064c
CBG11064d
CBG11064e
CBG11064f
CBG11064g
CBG11064h
Corresponding_CDS_historyCBG11064:bp228
CBG11064:bp239
CBG11064:bp255
Corresponding_transcriptCBG11064a.1
CBG11064b.1
CBG11064c.1
CBG11064d.1
CBG11064e.1
CBG11064f.1
CBG11064g.1
CBG11064h.1
Other_sequence (130)
Experimental_infoExpr_patternExpr1062347
Expr1066407
Microarray_resultsGPL14143_CBG11064_2905-2964_0.793_117_A
GPL14143_CBG11064_6776-6835_0.956_1_B
GPL14143_CBG11064_6779-6838_0.947_2_C
GPL14143_CBG11065_649-708_0.804_84_B
GPL14143_CBG11065_947-1006_0.813_76_A
GPL14143_CBG11065_1577-1636_0.876_32_C
MethodGene