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WormBase Tree Display for Gene: WBGene00036546

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Name Class

WBGene00036546SMapS_parentSequencecb25.fpc4044a
IdentityVersion2
NameCGC_nameCbr-unc-36From_analysisInferred_from_orthology
Sequence_nameCBG16666
Molecular_nameCBG16666a
CBG16666a.1
CBP23420
CBG16666b
CBP39579
CBG16666b.1
Other_nameCBG_16666Accession_evidenceNDBHE600949
Public_nameCbr-unc-36
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:06WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-unc-36
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
AlleleWBVar00124213
WBVar00124214
WBVar00124215
WBVar00124211
WBVar00124212
RNASeq_FPKMWBls:000000210.2039From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
7.01503From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
8.61948From_analysisRNASeq.briggsae.WBls:0000002.control_mean
8.6395From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
2.84727From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
7.17642From_analysisRNASeq.briggsae.WBls:0000002.control_mean
7.82726From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030.531123From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
1.03457From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
1.53801From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
1.41918From_analysisRNASeq.briggsae.WBls:0000003.control_mean
2.1884From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000411.9732From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
12.1687From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
12.3643From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
10.6031From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
12.2997From_analysisRNASeq.briggsae.WBls:0000004.control_mean
12.9088From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
13.6492From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.785062From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
23.7241From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.72291From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
9.07736From_analysisRNASeq.briggsae.WBls:0000027.control_mean
10.946From_analysisRNASeq.briggsae.WBls:0000027.control_median
11.6003From_analysisRNASeq.briggsae.WBls:0000027.control_mean
19.1692From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003513.0832From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.8015From_analysisRNASeq.briggsae.WBls:0000038.control_mean
1.58217From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
23.6402From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
8.15729From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
8.99172From_analysisRNASeq.briggsae.WBls:0000038.control_median
9.82616From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000411.58982From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
1.6352From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
1.84974From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.06428From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
3.30654From_analysisRNASeq.briggsae.WBls:0000041.control_mean
7.93687From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
5.00058From_analysisRNASeq.briggsae.WBls:0000041.control_median
5.02074From_analysisRNASeq.briggsae.WBls:0000041.control_mean
8.25541From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
8.64287From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000632.32247From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
2.58787From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
3.236From_analysisRNASeq.briggsae.WBls:0000063.control_mean
3.2812From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
3.72222From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
4.26625From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
3.39132From_analysisRNASeq.briggsae.WBls:0000063.control_mean
3.50171From_analysisRNASeq.briggsae.WBls:0000063.control_median
4.16791From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001017.01503From_analysisRNASeq.briggsae.total_over_all_stages.control_median
7.99845From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
8.04708From_analysisRNASeq.briggsae.total_over_all_stages.control_median
8.27335From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (33)
ParalogWBGene00025885Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: VWA N-terminal; von Willebrand factor, type A; von Willebrand factor A-like domain superfamily; and von Willebrand factor type A domain. Is an ortholog of C. elegans unc-36. In C. elegans, unc-36 is involved in several processes, including egg-laying behavior; pharyngeal pumping; and serotonin receptor signaling pathway.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG16666a
CBG16666b
Corresponding_CDS_historyCBG16666:bp194
CBG16666:bp255
Corresponding_transcriptCBG16666a.1
CBG16666b.1
Other_sequence (30)
Experimental_infoExpr_patternExpr1054664
Microarray_resultsGPL8303_CB6_WBGene00036546_A
GPL8303_CB6_WBGene00036546_B
GPL14143_CBG16666_436-495_0.775_174_C
GPL14143_CBG16666_3229-3288_0.923_7_B
GPL14143_CBG16666_3373-3432_0.936_2_A
MethodGene