Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00038900

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00038900SMapS_parentSequencecb25.fpc4140
IdentityVersion2
NameCGC_nameCbr-unc-54From_analysisInferred_from_orthology
Sequence_nameCBG19730
Molecular_nameCBG19730
CBG19730.1
CBP04616
Other_nameCBG_19730Accession_evidenceNDBHE601474
Public_nameCbr-unc-54
DB_infoDatabaseNDBlocus_tagCBG_19730
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-unc-54
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
Allele (18)
RNASeq_FPKMWBls:0000002418.668From_analysisRNASeq.briggsae.WBls:0000002.control_mean
523.12From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
636.069From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
96.8136From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
142.68From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
332.9From_analysisRNASeq.briggsae.WBls:0000002.control_median
349.671From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.957139From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
16.8574From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
8.90727From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
11.066From_analysisRNASeq.briggsae.WBls:0000003.control_mean
15.3833From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000488.9809From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
93.675From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
98.3692From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
101.797From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
93.4789From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
96.4325From_analysisRNASeq.briggsae.WBls:0000004.control_mean
99.5363From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:0000027397.815From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
498.885From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
586.871From_analysisRNASeq.briggsae.WBls:0000027.control_mean
863.914From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
562.431From_analysisRNASeq.briggsae.WBls:0000027.control_median
596.648From_analysisRNASeq.briggsae.WBls:0000027.control_mean
625.977From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:0000035758.08From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000381019.66From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
462.187From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
491.512From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
649.139From_analysisRNASeq.briggsae.WBls:0000038.control_median
695.031From_analysisRNASeq.briggsae.WBls:0000038.control_mean
806.766From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:0000041157.143From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
363.289From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
376.591From_analysisRNASeq.briggsae.WBls:0000041.control_median
389.893From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
410.264From_analysisRNASeq.briggsae.WBls:0000041.control_mean
730.731From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
204.844From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
382.495From_analysisRNASeq.briggsae.WBls:0000041.control_mean
449.071From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:0000063279.328From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
305.211From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
310.255From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
317.385From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
327.713From_analysisRNASeq.briggsae.WBls:0000063.control_mean
426.384From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
313.82From_analysisRNASeq.briggsae.WBls:0000063.control_median
355.294From_analysisRNASeq.briggsae.WBls:0000063.control_mean
493.202From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:0000101397.815From_analysisRNASeq.briggsae.total_over_all_stages.control_median
410.039From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
371.503From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
376.591From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00142393
00142394
00142395
00142396
Ortholog (40)
Paralog (22)
Structured_descriptionAutomated_descriptionPredicted to enable ATP binding activity; actin filament binding activity; and cytoskeletal motor activity. Predicted to be part of myosin complex. Is an ortholog of C. elegans unc-54. In C. elegans, unc-54 is involved in several processes, including egg-laying behavior; muscle contraction; and skeletal muscle myosin thick filament assembly.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG19730
Corresponding_CDS_historyCBG19730:bp194
CBG19730:bp255
Corresponding_transcriptCBG19730.1
Other_sequence (385)
Experimental_infoExpr_patternExpr1053340
Microarray_resultsGPL8303_CB6_WBGene00038900_A
GPL8303_CB6_WBGene00038900_B
GPL14143_CBG19730_4738-4797_0.762_125_A
GPL14143_CBG19730_5832-5891_0.952_1_B
Expression_clusterWBPaper00051425:CB_L1_vs_embryo_upregulated
WBPaper00051425:CB_L4_vs_embryo_upregulated
MethodGene