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WormBase Tree Display for Gene: WBGene00040890

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Name Class

WBGene00040890SMapS_parentSequencecb25.fpc4321
IdentityVersion2
NameCGC_nameCbr-unc-57From_analysisInferred_from_orthology
Sequence_nameCBG22292
Molecular_nameCBG22292a
CBG22292a.1
CBP33757
CBG22292b
CBP40402
CBG22292b.1
Other_nameCBG_22292Accession_evidenceNDBHE601428
Public_nameCbr-unc-57
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:10WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-unc-57
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
RNASeq_FPKMWBls:000000267.8566From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
71.9136From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
79.2257From_analysisRNASeq.briggsae.WBls:0000002.control_mean
97.9068From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
78.9073From_analysisRNASeq.briggsae.WBls:0000002.control_median
80.8945From_analysisRNASeq.briggsae.WBls:0000002.control_mean
85.901From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000355.1033From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
59.4292From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
63.7551From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
59.5672From_analysisRNASeq.briggsae.WBls:0000003.control_mean
59.8431From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000436.0683From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
39.6742From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
43.2801From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
43.0554From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
44.696From_analysisRNASeq.briggsae.WBls:0000004.control_mean
50.0371From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
51.0393From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002711.7103From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
31.5851From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
34.2842From_analysisRNASeq.briggsae.WBls:0000027.control_mean
59.5571From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
112.852From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
45.5711From_analysisRNASeq.briggsae.WBls:0000027.control_median
53.9261From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003567.5107From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038105.224From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
20.8508From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
22.1443From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
43.3963From_analysisRNASeq.briggsae.WBls:0000038.control_median
53.2168From_analysisRNASeq.briggsae.WBls:0000038.control_mean
64.6482From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:000004172.197From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
91.4489From_analysisRNASeq.briggsae.WBls:0000041.control_mean
97.0098From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
97.0283From_analysisRNASeq.briggsae.WBls:0000041.control_median
97.0467From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
99.542From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
63.7097From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
75.8518From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
84.2262From_analysisRNASeq.briggsae.WBls:0000041.control_mean
86.4308From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006328.4488From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
29.8599From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
33.8614From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
39.6808From_analysisRNASeq.briggsae.WBls:0000063.control_mean
39.7348From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
66.499From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
36.7981From_analysisRNASeq.briggsae.WBls:0000063.control_median
42.4544From_analysisRNASeq.briggsae.WBls:0000063.control_mean
56.3227From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010158.9758From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
64.6482From_analysisRNASeq.briggsae.total_over_all_stages.control_median
60.7608From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
63.7324From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00144239
Ortholog (30)
ParalogWBGene00029081Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034840Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040942Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be located in cytoplasm. Is an ortholog of C. elegans unc-57. In C. elegans, unc-57 is involved in clathrin-dependent endocytosis and necroptotic process.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS290 version of WormBase
Date_last_updated11 Sep 2023 00:00:00
Molecular_infoCorresponding_CDSCBG22292a
CBG22292b
Corresponding_CDS_historyCBG22292:bp194
Corresponding_transcriptCBG22292a.1
CBG22292b.1
Other_sequence (55)
Experimental_infoExpr_patternExpr1060921
Microarray_resultsGPL8303_CB6_WBGene00040890_A
GPL8303_CB6_WBGene00040890_B
GPL8303_CB6_WBGene00040890_C
GPL14143_CBG22292_704-763_0.785_69_C
GPL14143_CBG22292_976-1035_0.952_2_B
GPL14143_CBG22292_993-1052_0.948_3_A
MethodGene