WormBase Tree Display for Gene: WBGene00113211
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| WBGene00113211 | SMap | S_parent | Sequence | PPA_ChrV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 5 | |||||||
| Name | CGC_name | Ppa-unc-40 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA23657 | ||||||||
| Molecular_name | PPA23657 | ||||||||
| PPA23657.1 | |||||||||
| PP54034 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000080543 | ||||||||
| UMM-S13-5.23 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-unc-40 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:06 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 08 Feb 2019 15:42:27 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 3 | 08 May 2019 10:09:25 | WBPerson1983 | Name_change | CGC_name | Ppa-unc-40 | ||||
| 4 | 04 Jun 2020 14:38:22 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 5 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-unc-40 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | unc | ||||||||
| RNASeq_FPKM | WBls:0000032 | 3.96731 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 12.1812 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | ||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 3.96731 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 5.38284 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| Ortholog (36) | |||||||||
| Paralog (12) | |||||||||
| Structured_description | Automated_description | Is predicted to encode a protein with the following domains: Fibronectin type III superfamily; Neogenin; Immunoglobulin I-set domain; Immunoglobulin I-set; Fibronectin type III; Immunoglobulin-like fold; Immunoglobulin subtype 2; Immunoglobulin-like domain superfamily; Fibronectin type III domain; and Immunoglobulin subtype. Is an ortholog of C. elegans unc-40. In C. elegans, unc-40 is involved in several processes, including axon guidance; regulation of locomotion; and sex differentiation. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA23657 | |||||||
| Corresponding_transcript | PPA23657.1 | ||||||||
| Other_sequence (16) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_6202 | |||||||
| GPL14372_Probes_6204 | |||||||||
| GPL14372_Probes_45985 | |||||||||
| GPL14372_Probes_45986 | |||||||||
| GPL14372_Probes_45987 | |||||||||
| GPL14372_Probes_47987 | |||||||||
| GPL14372_Probes_47988 | |||||||||
| Reference | WBPaper00043625 | ||||||||
| WBPaper00048121 | |||||||||
| Remark | [190208 pad] The CGC name Ppa-unc-40 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [200603 pad] The CGC name Ppa-unc-40 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
