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WormBase Tree Display for Variation: WBVar00091556

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Name Class

WBVar00091556EvidencePaper_evidenceWBPaper00004900
NamePublic_nameok255
Other_nameF40E10.4.1:c.48_1019+8del
HGVSgCHROMOSOME_X:g.14674422_14676681del
Sequence_detailsSMapS_parentSequenceC26G2
Flanking_sequencesatttattctacttatacctgaaagtgccacattggtgtcacttttgttcgaactcatcaa
Mapping_targetC26G2
Type_of_mutationDeletion
PCR_productok255_external
ok255_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00005272
LaboratoryRB
PersonWBPerson46
KO_consortium_allele
StatusLive
AffectsGeneWBGene00004854
TranscriptF40E10.4.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScF40E10.4.1:c.48_1019+8del
cDNA_position95-?
CDS_position48-?
Protein_position16-?
Intron_number2-11/33
Exon_number2-11/34
InteractorWBInteraction000524191
WBInteraction000537329
WBInteraction000537350
WBInteraction000537352
DescriptionPhenotypeWBPhenotype:0000384Paper_evidenceWBPaper00040335
Curator_confirmedWBPerson7190
RemarkAVM axon guidance defectivePaper_evidenceWBPaper00040335
Curator_confirmedWBPerson7190
WBPhenotype:0001140Paper_evidenceWBPaper00050480
Curator_confirmedWBPerson712
Remarkslt-1 mutations had no effect on AQR and PQR migration on their ownPaper_evidenceWBPaper00050480
Curator_confirmedWBPerson712
EQ_annotationsAnatomy_termWBbt:0003927PATO:0000460Paper_evidenceWBPaper00050480
Curator_confirmedWBPerson712
WBbt:0004096PATO:0000460Paper_evidenceWBPaper00050480
Curator_confirmedWBPerson712
Phenotype_not_observedWBPhenotype:0000633Paper_evidenceWBPaper00045955
Curator_confirmedWBPerson557
RemarkAnimals did not have PLM branch defects.Paper_evidenceWBPaper00045955
Curator_confirmedWBPerson557
WBPhenotype:0001224Paper_evidenceWBPaper00032907
Curator_confirmedWBPerson712
RemarkHSN axons outgrowth does not significantly differ from control animals.Paper_evidenceWBPaper00032907
Curator_confirmedWBPerson712
EQ_annotationsAnatomy_termWBbt:0006830PATO:0000460Paper_evidenceWBPaper00032907
Curator_confirmedWBPerson712
WBPhenotype:0001652Paper_evidenceWBPaper00032446
Curator_confirmedWBPerson2021
ReferenceWBPaper00040335
WBPaper00032446
WBPaper00032907
WBPaper00045955
WBPaper00050480
RemarkSequenced by the C. elegans Gene Knockout ConsortiumPaper_evidenceWBPaper00041807
MethodKO_consortium_allele