Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar00142921

expand all nodes | collapse all nodes | view schema

Name Class

WBVar00142921NamePublic_namee27
Sequence_detailsSeqStatusPending_curation
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
Strain (13)
LaboratoryCB
StatusLive
AffectsGeneWBGene00001065
InteractorWBInteraction000501355
WBInteraction000501361
WBInteraction000501367
WBInteraction000519147
WBInteraction000519159
WBInteraction000537306
WBInteraction000571293
WBInteraction000571294
WBInteraction000571571
GeneticsMapping_dataIn_2_point (21)
In_multi_point (33)
In_pos_neg_data (17)
DescriptionPhenotypeWBPhenotype:0000583Paper_evidenceWBPaper00000031
WBPaper00000465
WBPaper00005747
Person_evidenceWBPerson261
Curator_confirmedWBPerson48
WBPerson712
WBPerson2987
RemarkDumpy as L3 and L4, stronger dumpy as adult, weak/mild dumpy as Dauer.Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
medium dumpy; L1 non-dumpy.Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Authors report "medium dpy" (Table 1)Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
RecessivePaper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
EQ_annotationsLife_stageWBls:0000035PATO:0000460Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
WBls:0000038PATO:0000460Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
WBls:0000041PATO:0000460Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
WBls:0000032PATO:0000460Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
Phenotype_assayTemperature16C, 25CPaper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
GenotypekaIs12 [col-19::gfp]Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
Ease_of_scoringES3_Easy_to_scorePerson_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0000961Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
RemarkTable 1Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
Phenotype_assayGenotypekaIs12 [col-19::gfp]Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
WBPhenotype:0001236Paper_evidenceWBPaper00053771
Curator_confirmedWBPerson499
Remarkdpy-3(e27) induces expression of nlp-29p::GFP (Figure S4C)Paper_evidenceWBPaper00053771
Curator_confirmedWBPerson499
Phenotype_assayGenotypefrIs7 [nlp-29p::gfp, col-12p::DsRed]Paper_evidenceWBPaper00053771
Curator_confirmedWBPerson499
WBPhenotype:0001412Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
RemarkAuthors report "multiple or discontinuous ala" (Table 1)Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
Phenotype_assayGenotypekaIs12 [col-19::gfp]Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
WBPhenotype:0001515Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
RemarkStruts are missing and any remaining struts are randomly arranged.Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
RecessivePaper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
EQ_annotationsLife_stageWBls:0000041PATO:0000460Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
Phenotype_assayTemperature25CPaper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
WBPhenotype:0001517Paper_evidenceWBPaper00000465
WBPaper00005747
Curator_confirmedWBPerson712
WBPerson2987
RemarkAnnulae are severely effected; only smooth or rough surfaces are present.Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
Authors report "missing or amorphous annuli" (Table 1)Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
RecessivePaper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
EQ_annotationsLife_stageWBls:0000041PATO:0000460Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
Phenotype_assayTemperature25CPaper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
GenotypekaIs12 [col-19::gfp]Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
WBPhenotype:0002539Paper_evidenceWBPaper00053771
Curator_confirmedWBPerson499
Remarkdpy-3(e27) induces expression of nlp-29p::GFP (Figure S4C)Paper_evidenceWBPaper00053771
Curator_confirmedWBPerson499
Phenotype_assayGenotypefrIs7 [nlp-29p::gfp, col-12p::DsRed]Paper_evidenceWBPaper00053771
Curator_confirmedWBPerson499
Phenotype_not_observedWBPhenotype:0000505Paper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
RemarkMales are not Ram.Paper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
EQ_annotationsAnatomy_termWBbt:0006941PATO:0000460Paper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
Life_stageWBls:0000056PATO:0000460Paper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
Phenotype_assayTemperature20CPaper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
Genotypehim-5(e1490)Paper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
WBPhenotype:0000645Paper_evidenceWBPaper00000465
Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Remarknon-rollerPerson_evidenceWBPerson261
Curator_confirmedWBPerson712
EQ_annotationsLife_stageWBls:0000002PATO:0000460Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
Phenotype_assayTemperature16C, 25CPaper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
WBPhenotype:0001412Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
EQ_annotationsLife_stageWBls:0000041PATO:0000460Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
Phenotype_assayTemperature25CPaper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
WBPhenotype:0001516Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
EQ_annotationsLife_stageWBls:0000041PATO:0000460Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
Phenotype_assayTemperature25CPaper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
WBPhenotype:0001732Paper_evidenceWBPaper00032033
Curator_confirmedWBPerson712
RemarkAnimals exhibited the same pH survival profile as the wild-type strain over a range of pH 3 to pH 10.Paper_evidenceWBPaper00032033
Curator_confirmedWBPerson712
Phenotype_assayTreatmentMixed or synchronised populations of nematodes were exposed to 500ul M9 buffer (100 mM phosphate, 85 mM NaCl, 1 mM MgSO4 buffered at the appropriate pH by varying KH2PO4 and Na2HPO4 concentrations accordingly) at varying pHs in a 24-well plate format for 4 h (200 nematodes/well). Nematodes were scored as viable by the presence of touch response and pharyngeal pumping.Paper_evidenceWBPaper00032033
Curator_confirmedWBPerson712
ReferenceWBPaper00001328
WBPaper00000031
WBPaper00005747
WBPaper00000465
WBPaper00032033
WBPaper00053771
WBPaper00065103
MethodAllele