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WormBase Tree Display for Variation: WBVar00143365

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Name Class

WBVar00143365EvidencePaper_evidenceWBPaper00005629
NamePublic_namee644
Other_name (20)
HGVSgCHROMOSOME_V:g.4505497G>A
Sequence_detailsSMapS_parentSequenceT28F12
Flanking_sequencescaaaggaggcgattaccaaattccgcgcgtgttatttcacaatttgacggtaagggtgca
Mapping_targetT28F12
Type_of_mutationSubstitutiongaPaper_evidenceWBPaper00005629
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004189
WBStrain00004365
WBStrain00034029
WBStrain00034031
LaboratoryCB
StatusLive
AffectsGeneWBGene00006796
Transcript (17)
InteractorWBInteraction000007722
WBInteraction000051964
WBInteraction000052185
WBInteraction000052340
WBInteraction000052341
WBInteraction000501054
WBInteraction000501055
WBInteraction000501056
GeneticsInterpolated_map_positionV-5.18024
Mapping_dataIn_2_point125
In_multi_point143
1524
3277
In_pos_neg_data846
2870
2871
2872
DescriptionPhenotypeWBPhenotype:0000050Paper_evidenceWBPaper00025190
Curator_confirmedWBPerson712
PenetranceIncompletePaper_evidenceWBPaper00025190
Curator_confirmedWBPerson712
WBPhenotype:0000070Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Remarkmale tail abnormalPerson_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0000342Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Remarkbursa smallPerson_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0000583Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Remarkslightly dumpyPerson_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0000643Paper_evidenceWBPaper00000031
WBPaper00001474
Person_evidenceWBPerson261
Curator_confirmedWBPerson48
WBPerson712
Remarkirregular, sometimes rippling movement, especially in reversePerson_evidenceWBPerson261
Curator_confirmedWBPerson712
UncPaper_evidenceWBPaper00001474
Curator_confirmedWBPerson712
WBPhenotype:0000646Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Remarkslightly slowPerson_evidenceWBPerson261
Curator_confirmedWBPerson712
Ease_of_scoringES2_Difficult_to_scorePerson_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0001226Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Remarkvariable abnormalities in VD and DD commissuresPerson_evidenceWBPerson261
Curator_confirmedWBPerson712
EQ_annotationsAnatomy_termWBbt:0005303PATO:0000460Person_evidenceWBPerson261
Curator_confirmedWBPerson712
WBbt:0005270PATO:0000460Person_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0001364Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Remarkfan reducedPerson_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0001492Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Remark19% of embryos NobPerson_evidenceWBPerson261
Curator_confirmedWBPerson712
PenetranceIncomplete19%Person_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0001509Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Remarkrays variably absentPerson_evidenceWBPerson261
Curator_confirmedWBPerson712
Phenotype_not_observedWBPhenotype:0000062Paper_evidenceWBPaper00001474
Curator_confirmedWBPerson712
Remarkviable Unc allelePaper_evidenceWBPaper00001474
Curator_confirmedWBPerson712
WBPhenotype:0001660Paper_evidenceWBPaper00006052
Curator_confirmedWBPerson2021
RemarkNo disruption of ASE asymmetry (as seen with lim-6 reporters)Paper_evidenceWBPaper00006052
Curator_confirmedWBPerson2021
Variation_effectHypomorph_reduction_of_functionPaper_evidenceWBPaper00006052
Curator_confirmedWBPerson2021
Phenotype_assayGenotypeotIs114, otIs6Paper_evidenceWBPaper00006052
Curator_confirmedWBPerson2021
Reference (12)
MethodSubstitution_allele