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  • April 22, 2008: New release of WormBase: WS189
    WormBase has been updated to the WS189 release of the database. This release includes a new Ontology Search and numerous enhancements to the Genome Browser.
  • April 21, 2008: modENCODE position at OICR in Toronto
    The Stein Lab at the Ontario Institute for Cancer Research is recruiting a software engineer and a data curator in support of the modENCODE Data Coordinating Center. The ideal candidate for the developer position will be Bachelors or Masters-level biologist or computer scientist with significant experience in biological databases and production-quality software development.  The data curator should have a Masters degree or Ph.D. in a the life sciences, experience with high volume functional genomics data, common bioinformatics tools, and some programming. A background in C. elegans or D. melanogaster biology or genetics would be a plus.  These positions are based in Toronto, Canada.  Please contact Lincoln Stein <lstein@cshl.edu> for more information.
  • March 25, 2008: C. japonica assembly now available
    The preliminary assembly of C. japonica is now available from the Genome Sequencing Center (WUSTL) website. BLAST searching of the assembly is also available.
  • March 24, 2008: Cold Spring Harbor positions with the iPlant Cyberinfrastructure project
    Cold Spring Harbor is seeking applicants for the positions of Scientific Informatics Analyst, Scientific Informatics Developer and Web Applications Developer to work on the iPlant cyberinfrastructure project.
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Worm Reagents C. elegans genomic clones, C. briggsae genomic clones (information, ordering), YK EST clones, CGC strains, RNAi clone mapping, Knockouts (KO Consortium, NBP-Japan), SAGE, C. elegans anatomy parts list
GeneService [Fosmid clones, RNAi libraries, ORFeome v1.1, Promoterome], OpenBiosystems [Orfeome v1.1], Fire vectors (Full list, via AddGene), Microarrays (Affymetrix, Agilent, WUSTL),

Related Databases and Web Sites Nematode.net, BaNG: Nematode and Neglected Genomics, WormAtlas, Other Model Organism Databases Leon Avery's WWW and more (Resources)

Key Publications WormBook, C. elegans II book (1997), The Mind of a Worm (White et al, 1986), The Genetics of C. elegans (Brenner, 1974), Durbin Ph.D. thesis (1987), Modes et formes... (Maupas, 1900), all citations in EndNote format

Useful Software AcePerl, GMOD, BioPerl, ACeDB, MySQL, Textpresso, Sockeye Genome Browser

Worm Genome Sequence Centers Wellcome Trust Sanger Institute C. elegans Site, Washington University C. elegans Site and SNP site
Main Site CSHL (NY, USA)
Development Site CSHL (NY, USA)

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Data Mining Server aceserver (CSHL, NY, USA; about data mining)

WormBase is supported by a grant from the National Human Genome Research Institute at the US National Institutes of Health # P41 HG02223 and the British Medical Research Council.



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