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WormBase Schema for Model: Sequence

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Class

?SequenceDNAUNIQUE?DNAUNIQUEInt
SMapS_parentUNIQUECanonical_parentUNIQUE?SequenceXREFGenomic_non_canonical
Genomic_parentUNIQUE?SequenceXREFNongenomic
AGP_parentUNIQUE?SequenceXREFAGP_fragment
S_childGene_child?GeneXREFSequenceUNIQUEIntUNIQUEInt#SMap_info
CDS_child?CDSXREFSequenceUNIQUEIntUNIQUEInt#SMap_info
Transcript?TranscriptXREFSequenceUNIQUEIntUNIQUEInt#SMap_info
Pseudogene?PseudogeneXREFSequenceUNIQUEIntUNIQUEInt#SMap_info
Transposon?TransposonXREFSequenceUNIQUEIntUNIQUEInt#SMap_info
Genomic_non_canonical?SequenceXREFCanonical_parentUNIQUEIntUNIQUEInt#SMap_info
Nongenomic?SequenceXREFGenomic_parentUNIQUEIntUNIQUEInt#SMap_info
PCR_product?PCR_productXREFCanonical_parentUNIQUEIntUNIQUEInt#SMap_info
Operon?OperonXREFCanonical_parentUNIQUEIntUNIQUEInt#SMap_info
AGP_fragment?SequenceXREFAGP_parentIntUNIQUEInt#SMap_info
Allele?VariationXREFSequenceUNIQUEIntUNIQUEInt#SMap_info
Oligo_set?Oligo_setXREFCanonical_parentUNIQUEIntUNIQUEInt#SMap_info
Feature_object?FeatureXREFSequenceUNIQUEIntUNIQUEInt#SMap_info
Feature_data?Feature_dataXREFSequenceUNIQUEIntUNIQUEInt#SMap_info
Homol_data?Homol_dataXREFSequenceUNIQUEIntUNIQUEInt#SMap_info
StructureFromSourceUNIQUE?SequenceXREFSubsequence
Source_exonsIntUNIQUEInt
Subsequence?SequenceXREFSourceUNIQUEIntUNIQUEInt
Overlap_rightUNIQUE?SequenceXREFOverlap_leftUNIQUEInt
Overlap_leftUNIQUE?SequenceXREFOverlap_right
Gap_rightUNIQUEIntText
Clone_left_end?CloneXREFClone_left_endUNIQUEInt
Clone_right_end?CloneXREFClone_right_endUNIQUEInt
Flipped
DB_infoDatabase?Database?Database_field?Text
Protein_id?SequenceUNIQUETextUNIQUEInt
Secondary_accession?Text
DB_remark?Text#Evidence
Keyword?Keyword
DB_annotation?DatabaseUNIQUE?LongText
EMBL_dump_info#EMBL_dump_info
OriginFrom_databaseUNIQUE?DatabaseUNIQUEInt
From_author?AuthorXREFSequence
From_laboratoryUNIQUE?Laboratory
Genetic_codeUNIQUE?Genetic_code
DateDateTypeText
Date_directoryUNIQUEText
Life_stageUNIQUE?Life_stage
SpeciesUNIQUE?Species
LibraryUNIQUE?Library
StrainUNIQUE?Strain
Anatomy_term?Anatomy_term
AnalysisUNIQUE?Analysis
Read_coverageUNIQUEFloat
VisibleTitleUNIQUE?Text
Matching_CDS?CDSXREFMatching_cDNA#Evidence
Matching_transcript?TranscriptXREFMatching_cDNA#Evidence
Matching_pseudogene?PseudogeneXREFMatching_cDNA#Evidence
Clone?CloneXREFSequence
Clone_end_seq_read?CloneXREFEnd_sequence
GO_term?GO_termXREFSequence?GO_code#Evidence
Gene?GeneXREFOther_sequence
Paired_read?SequenceXREFPaired_read
Reference?PaperXREFSequence
Expr_pattern?Expr_patternXREFSequence
Interaction?Interaction
RNAi?RNAiXREFSequence
Confidential_remark?Text
Remark?Text#Evidence
PropertiesGenomic_canonicalGene_countUNIQUEInt
Briggsae_canonical
Genomic
ChecksumMD5UNIQUEText
CRC64UNIQUEText
cDNAcDNA_EST
EST_5
EST_3
Capped_5
TSL_tag
EST_consensus
RNAUNIQUEmRNAUNIQUEProcessed_mRNA
Unprocessed_mRNA
tRNATypeUNIQUEText
AnticodonUNIQUEText
rRNAUNIQUEText
snRNAUNIQUEText
snoRNAUNIQUEText
scRNAUNIQUEText
miRNAUNIQUEText
ncRNAUNIQUEText
Ignore#Evidence
Show_in_reverse_orientation
StatusReceivedUNIQUEDateType
Library_constructionUNIQUEDateType
ShotgunUNIQUEDateType
Shotgun_completeUNIQUEDateType
ContiguousUNIQUEDateType
FinishedUNIQUEDateType
SubmittedUNIQUEDateType
AnnotatedUNIQUEDateType
ArchivedUNIQUEDateTypeUNIQUEText
Match_typeUNIQUEMatch_with_function
Match_without_function
Link
SplicesConfirmed_intronIntInt#Splice_confirmation
Predicted_5?MethodIntIntUNIQUEFloat
Predicted_3?MethodIntIntUNIQUEFloat
Cluster_informationContains_reads?SequenceXREFContained_in_cluster
Contained_in_cluster?SequenceXREFContains_reads
Map?MapXREFSequence#Map_position
Interpolated_map_positionUNIQUE?MapUNIQUEFloat
Oligo?OligoXREFIn_sequenceIntUNIQUEInt?Method
Defines_feature?FeatureXREFDefined_by_sequence#Evidence
Assembly_tagsTextIntIntText
HomolDNA_homol?SequenceXREFDNA_homol?MethodFloatIntUNIQUEIntIntUNIQUEInt#Homol_info
Pep_homol?ProteinXREFDNA_homol?MethodFloatIntUNIQUEIntIntUNIQUEInt#Homol_info
Motif_homol?MotifXREFDNA_homol?MethodFloatIntUNIQUEIntIntUNIQUEInt#Homol_info
Homol_homol?Homol_dataXREFDNA_homol?MethodFloatIntUNIQUEIntIntUNIQUEInt#Homol_info
MethodUNIQUE?Method